Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DDE02_RS01720 Genome accession   NZ_CP029005
Coordinates   362461..363270 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357461..368270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS01685 (DDE02_01695) - 358019..358174 (-) 156 Protein_325 hypothetical protein -
  DDE02_RS01690 (DDE02_01700) rpoZ 358213..358491 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DDE02_RS01695 (DDE02_01705) gmk 358564..359193 (-) 630 WP_002116973.1 guanylate kinase -
  DDE02_RS01700 (DDE02_01710) ispH 359316..360266 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DDE02_RS01705 (DDE02_01715) fimU 360436..360909 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DDE02_RS01710 (DDE02_01720) pilV 360903..361463 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  DDE02_RS01715 (DDE02_01725) pilW 361463..362464 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  DDE02_RS01720 (DDE02_01730) pilX 362461..363270 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DDE02_RS01725 (DDE02_01735) pilY1 363282..367136 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  DDE02_RS01730 (DDE02_01740) pilY2 367147..367629 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  DDE02_RS01735 (DDE02_01745) pilE 367626..368051 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=289244 DDE02_RS01720 WP_002117088.1 362461..363270(+) (pilX) [Acinetobacter pittii strain AbW39]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=289244 DDE02_RS01720 WP_002117088.1 362461..363270(+) (pilX) [Acinetobacter pittii strain AbW39]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment