Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC68_RS16240 Genome accession   NZ_CP034305
Coordinates   3248501..3249175 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3243501..3254175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS16205 (EHC68_16460) - 3243876..3244664 (+) 789 WP_005496822.1 glycosyltransferase family 2 protein -
  EHC68_RS16210 (EHC68_16465) - 3244713..3245648 (-) 936 WP_025792506.1 glycosyl transferase family 90 -
  EHC68_RS16215 (EHC68_16470) coaD 3245635..3246117 (-) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -
  EHC68_RS16220 (EHC68_16475) mutM 3246214..3247023 (-) 810 WP_005489581.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EHC68_RS16225 (EHC68_16480) - 3247126..3247602 (-) 477 WP_021486880.1 hypothetical protein -
  EHC68_RS16230 (EHC68_16485) rpmG 3247778..3247948 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  EHC68_RS16235 (EHC68_16490) rpmB 3247962..3248198 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  EHC68_RS16240 (EHC68_16495) radC 3248501..3249175 (-) 675 WP_005482037.1 RadC family protein Machinery gene
  EHC68_RS16245 (EHC68_16500) - 3249289..3250962 (-) 1674 WP_025792503.1 methyl-accepting chemotaxis protein -
  EHC68_RS16255 (EHC68_16510) coaBC 3251147..3252346 (+) 1200 WP_025508117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EHC68_RS16260 (EHC68_16515) slmA 3252507..3253097 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  EHC68_RS16265 (EHC68_16520) - 3253103..3254053 (+) 951 WP_017449076.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=288723 EHC68_RS16240 WP_005482037.1 3248501..3249175(-) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=288723 EHC68_RS16240 WP_005482037.1 3248501..3249175(-) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACAGATGC
CGAATTACTGGCGATATTCCTCCGCACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGCTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTGTATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCACAATCACCCGTCCGGTGTCGCCGAGCCGAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGCATTTTGGACCATTTCGTTATTGGTGATGGGG
AAAGTGTCTCTTTTGCAGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384

Multiple sequence alignment