Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DBX26_RS04485 Genome accession   NZ_CP028943
Coordinates   956768..957052 (+) Length   94 a.a.
NCBI ID   WP_031779272.1    Uniprot ID   A0AAN0Y541
Organism   Vibrio sp. dhg     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951768..962052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS04475 (DBX26_04470) - 954245..954517 (+) 273 WP_014231223.1 HU family DNA-binding protein -
  DBX26_RS04480 (DBX26_04475) ppiD 954721..956580 (+) 1860 WP_020336144.1 peptidylprolyl isomerase -
  DBX26_RS04485 (DBX26_04480) comEA 956768..957052 (+) 285 WP_031779272.1 ComEA family DNA-binding protein Machinery gene
  DBX26_RS04490 (DBX26_04485) rrtA 957135..957686 (-) 552 WP_020336146.1 rhombosortase -
  DBX26_RS04495 (DBX26_04490) - 957690..958313 (+) 624 WP_065296543.1 tRNA-uridine aminocarboxypropyltransferase -
  DBX26_RS04500 (DBX26_04495) - 958310..959632 (-) 1323 WP_118117994.1 anti-phage deoxyguanosine triphosphatase -
  DBX26_RS04505 (DBX26_04500) yfbR 959656..960240 (-) 585 WP_014231229.1 5'-deoxynucleotidase -
  DBX26_RS04510 (DBX26_04505) - 960331..961545 (-) 1215 WP_014231230.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10182.78 Da        Isoelectric Point: 5.0914

>NTDB_id=288723 DBX26_RS04485 WP_031779272.1 956768..957052(+) (comEA) [Vibrio sp. dhg]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGEKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=288723 DBX26_RS04485 WP_031779272.1 956768..957052(+) (comEA) [Vibrio sp. dhg]
ATGAAATGGGTTTTAACTTTATTGTTATGCGTATTTGCACCGTTTGGGTTGGCCGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCTGAAGAGATTGCAACAATGCTGAAAGGGATTGGTGAAAAGA
AAGCGCAAGATATTGTCGATTATCGTACAGAGCATGGCCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAGGGTCGCATCATCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

82.979

100

0.83
  comEA Vibrio campbellii strain DS40M4

71.579

100

0.723
  comEA Vibrio cholerae strain A1552

57.447

100

0.574
  comEA Vibrio cholerae C6706

57.447

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

50.746

71.277

0.362

Multiple sequence alignment