Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY61_RS08875 Genome accession   NZ_CP028766
Coordinates   1881402..1882031 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1876402..1887031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY61_RS08855 (AOY61_09490) ycbZ 1876803..1878563 (-) 1761 WP_000156526.1 Lon protease family protein -
  AOY61_RS08860 (AOY61_09495) matP 1878749..1879201 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY61_RS08865 (AOY61_09500) ompA 1879277..1880317 (-) 1041 WP_000750416.1 porin OmpA -
  AOY61_RS08870 (AOY61_09510) sulA 1880674..1881183 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY61_RS08875 (AOY61_09515) sxy/tfoX 1881402..1882031 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY61_RS08880 (AOY61_09520) yccS 1881994..1884156 (-) 2163 WP_000875015.1 YccS family putative transporter -
  AOY61_RS08885 (AOY61_09525) yccF 1884166..1884612 (-) 447 WP_096979446.1 YccF domain-containing protein -
  AOY61_RS08890 (AOY61_09530) helD 1884735..1886789 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287563 AOY61_RS08875 WP_000839153.1 1881402..1882031(+) (sxy/tfoX) [Escherichia coli strain A8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287563 AOY61_RS08875 WP_000839153.1 1881402..1882031(+) (sxy/tfoX) [Escherichia coli strain A8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment