Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECRM9131_RS25890 Genome accession   NZ_CP028429
Coordinates   4880217..4880753 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain RM9131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4875217..4885753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM9131_RS25865 (ECRM9131_25860) aphA 4875506..4876219 (+) 714 WP_001226928.1 acid phosphatase AphA -
  ECRM9131_RS25870 (ECRM9131_25865) yjbQ 4876330..4876746 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECRM9131_RS25875 (ECRM9131_25870) yjbR 4876750..4877106 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ECRM9131_RS25880 (ECRM9131_25875) uvrA 4877141..4879963 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ECRM9131_RS25890 (ECRM9131_25885) ssb 4880217..4880753 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECRM9131_RS25895 (ECRM9131_25890) yjcB 4880852..4881133 (-) 282 WP_001341690.1 YjcB family protein -
  ECRM9131_RS25905 (ECRM9131_25900) pdeC 4881563..4883149 (+) 1587 WP_000019527.1 c-di-GMP phosphodiesterase PdeC -
  ECRM9131_RS25910 (ECRM9131_25905) soxS 4883152..4883475 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ECRM9131_RS25915 (ECRM9131_25910) soxR 4883561..4884025 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=284776 ECRM9131_RS25890 WP_000168305.1 4880217..4880753(+) (ssb) [Escherichia coli strain RM9131]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=284776 ECRM9131_RS25890 WP_000168305.1 4880217..4880753(+) (ssb) [Escherichia coli strain RM9131]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment