Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SK637_RS01655 Genome accession   NZ_CP028415
Coordinates   313339..315318 (+) Length   659 a.a.
NCBI ID   WP_033688121.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 308339..320318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01615 (SK637_00317) - 308732..308962 (+) 231 WP_004260552.1 DUF1146 family protein -
  SK637_RS01620 (SK637_00318) murA 308986..310269 (+) 1284 WP_033688117.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SK637_RS01625 (SK637_00319) - 310262..310450 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  SK637_RS01630 (SK637_00320) endA 310489..311313 (+) 825 WP_033688119.1 DNA-entry nuclease EndA Machinery gene
  SK637_RS01635 (SK637_00321) - 311468..312799 (+) 1332 WP_033688120.1 hemolysin family protein -
  SK637_RS01655 (SK637_00324) amiA 313339..315318 (+) 1980 WP_033688121.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS01660 (SK637_00325) amiC 315385..316881 (+) 1497 WP_033688122.1 ABC transporter permease Regulator
  SK637_RS01665 (SK637_00326) amiD 316881..317807 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SK637_RS01670 (SK637_00327) amiE 317816..318883 (+) 1068 WP_033688123.1 ABC transporter ATP-binding protein Regulator
  SK637_RS01675 (SK637_00328) amiF 318894..319820 (+) 927 WP_033688124.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73047.21 Da        Isoelectric Point: 4.8883

>NTDB_id=284687 SK637_RS01655 WP_033688121.1 313339..315318(+) (amiA) [Streptococcus mitis strain SK637]
MKKSRVFVAAGVALFATGVLVACGNSKSSDSTAPKTYGYVYSADPETLDYLISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=284687 SK637_RS01655 WP_033688121.1 313339..315318(+) (amiA) [Streptococcus mitis strain SK637]
ATGAAAAAAAGTAGAGTCTTTGTTGCAGCAGGAGTTGCTTTATTTGCGACGGGTGTGTTAGTAGCTTGTGGGAATTCAAA
ATCATCTGATTCGACAGCTCCAAAAACTTATGGCTATGTCTATTCGGCTGATCCAGAAACATTGGACTATCTTATCTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATATGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAGGACGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCGGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTCAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAGCGTAACTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCATCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATCGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681
  amiA3 Streptococcus thermophilus LMD-9

67.879

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677

Multiple sequence alignment