Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SK637_RS01665 Genome accession   NZ_CP028415
Coordinates   316881..317807 (+) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 311881..322807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01655 (SK637_00324) amiA 313339..315318 (+) 1980 WP_033688121.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS01660 (SK637_00325) amiC 315385..316881 (+) 1497 WP_033688122.1 ABC transporter permease Regulator
  SK637_RS01665 (SK637_00326) amiD 316881..317807 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SK637_RS01670 (SK637_00327) amiE 317816..318883 (+) 1068 WP_033688123.1 ABC transporter ATP-binding protein Regulator
  SK637_RS01675 (SK637_00328) amiF 318894..319820 (+) 927 WP_033688124.1 ATP-binding cassette domain-containing protein Regulator
  SK637_RS01680 (SK637_00330) - 320275..321252 (+) 978 WP_033688125.1 ABC transporter substrate-binding protein -
  SK637_RS01685 (SK637_00331) - 321263..322156 (+) 894 WP_033688126.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=284689 SK637_RS01665 WP_000103691.1 316881..317807(+) (amiD) [Streptococcus mitis strain SK637]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=284689 SK637_RS01665 WP_000103691.1 316881..317807(+) (amiD) [Streptococcus mitis strain SK637]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCCTA
TTCTTACTGGGGATCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTTAATGATGTCAGCAAGGTAAACGACTTTAGCGCTCGC
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCAGTGATTGCGACAGTGATTAACCTAGTTATCGGTGTCTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTACAACGTCATCTCAAACATCCCATCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTAACAACATGGATCGGGATTGCCTTCAT
GATCCGTGTGCAAATTTTGCGCTATCGTGATTTGGAATACAACTTGGCATCACGTACTTTGGGAACTCCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACTAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCGCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment