Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SK637_RS01675 Genome accession   NZ_CP028415
Coordinates   318894..319820 (+) Length   308 a.a.
NCBI ID   WP_033688124.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 313894..324820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01660 (SK637_00325) amiC 315385..316881 (+) 1497 WP_033688122.1 ABC transporter permease Regulator
  SK637_RS01665 (SK637_00326) amiD 316881..317807 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SK637_RS01670 (SK637_00327) amiE 317816..318883 (+) 1068 WP_033688123.1 ABC transporter ATP-binding protein Regulator
  SK637_RS01675 (SK637_00328) amiF 318894..319820 (+) 927 WP_033688124.1 ATP-binding cassette domain-containing protein Regulator
  SK637_RS01680 (SK637_00330) - 320275..321252 (+) 978 WP_033688125.1 ABC transporter substrate-binding protein -
  SK637_RS01685 (SK637_00331) - 321263..322156 (+) 894 WP_033688126.1 ABC transporter permease -
  SK637_RS01690 (SK637_00332) - 322169..322972 (+) 804 WP_000157661.1 ABC transporter ATP-binding protein -
  SK637_RS01695 (SK637_00333) treR 323005..323715 (-) 711 WP_033688127.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34810.88 Da        Isoelectric Point: 6.6226

>NTDB_id=284691 SK637_RS01675 WP_033688124.1 318894..319820(+) (amiF) [Streptococcus mitis strain SK637]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=284691 SK637_RS01675 WP_033688124.1 318894..319820(+) (amiF) [Streptococcus mitis strain SK637]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTTGCGGTTAAAAA
TGCCAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTTAATGATACAAGTAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCAGCGGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGCCTGTTTAAGGATGAGGAAGAACGTAAAGAGAAAGTTAAAAATATCA
TTCGTGAAGTGGGTCTTCTTGCTGAGCATTTGACTCGTTATCCTCATGAGTTTTCAGGTGGTCAACGTCAACGTATAGGT
ATTGCCCGTGCCTTGGTGATGCAACCAGACTTTGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTTTCTGTTCGTGC
CCAAGTCTTGAACTTGCTTAAAAAATTCCAAAAAGAGCTCGGTTTGACCTATCTCTTCATCGCCCATGATTTGTCGGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTATAAGGGTGTTATTGTAGAGGTTGCAGAGACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAGGCCTTGCTTTCAGCGGTACCAATTCCAGACCCAATCTTGGAACGCAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGACAAACCTTCTATGGTTGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCTGAATTGGCACGTTATCAACAAGGATTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment