Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SK637_RS01695 Genome accession   NZ_CP028415
Coordinates   323005..323715 (-) Length   236 a.a.
NCBI ID   WP_033688127.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 318005..328715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01675 (SK637_00328) amiF 318894..319820 (+) 927 WP_033688124.1 ATP-binding cassette domain-containing protein Regulator
  SK637_RS01680 (SK637_00330) - 320275..321252 (+) 978 WP_033688125.1 ABC transporter substrate-binding protein -
  SK637_RS01685 (SK637_00331) - 321263..322156 (+) 894 WP_033688126.1 ABC transporter permease -
  SK637_RS01690 (SK637_00332) - 322169..322972 (+) 804 WP_000157661.1 ABC transporter ATP-binding protein -
  SK637_RS01695 (SK637_00333) treR 323005..323715 (-) 711 WP_033688127.1 trehalose operon repressor Regulator
  SK637_RS01700 (SK637_00334) treP 323900..325867 (+) 1968 WP_033688129.1 PTS system trehalose-specific EIIBC component -
  SK637_RS01705 (SK637_00335) treC 325931..327556 (+) 1626 WP_033688130.1 alpha,alpha-phosphotrehalase -
  SK637_RS01710 (SK637_00336) - 327698..327946 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27692.80 Da        Isoelectric Point: 7.3127

>NTDB_id=284692 SK637_RS01695 WP_033688127.1 323005..323715(-) (treR) [Streptococcus mitis strain SK637]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQIVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNITRQIAEQSIY
SYIEDDLKLLIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=284692 SK637_RS01695 WP_033688127.1 323005..323715(-) (treR) [Streptococcus mitis strain SK637]
ATGAAGAAATACCAACAACTTTTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGAACCAGTATCAGGTAAGCCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAATCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACA
AGCTACCAAGAGCTAGTTCAAGAACTTGGACTGCGCTCCAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTAATAACTGGCTTCCCAGAGTTTCGTATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATATCACTCGCCAAATTGCTGAGCAGTCCATCTAT
TCTTATATAGAGGACGACCTCAAACTCCTTATTGATTATGCTCAAAAGGAAATAACCATTGACCACTCAAATGACAGAGA
CAAGATTCTCATGGACATAGGCAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAGTTTACTGAAAGCCGCCATAAACTCGAAAAATTCAGATTTGTAGATTTTGCAAAACGTAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.475

100

0.585

Multiple sequence alignment