Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SK637_RS01660 Genome accession   NZ_CP028415
Coordinates   315385..316881 (+) Length   498 a.a.
NCBI ID   WP_033688122.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 310385..321881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01630 (SK637_00320) endA 310489..311313 (+) 825 WP_033688119.1 DNA-entry nuclease EndA Machinery gene
  SK637_RS01635 (SK637_00321) - 311468..312799 (+) 1332 WP_033688120.1 hemolysin family protein -
  SK637_RS01655 (SK637_00324) amiA 313339..315318 (+) 1980 WP_033688121.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS01660 (SK637_00325) amiC 315385..316881 (+) 1497 WP_033688122.1 ABC transporter permease Regulator
  SK637_RS01665 (SK637_00326) amiD 316881..317807 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SK637_RS01670 (SK637_00327) amiE 317816..318883 (+) 1068 WP_033688123.1 ABC transporter ATP-binding protein Regulator
  SK637_RS01675 (SK637_00328) amiF 318894..319820 (+) 927 WP_033688124.1 ATP-binding cassette domain-containing protein Regulator
  SK637_RS01680 (SK637_00330) - 320275..321252 (+) 978 WP_033688125.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55712.21 Da        Isoelectric Point: 9.3386

>NTDB_id=284688 SK637_RS01660 WP_033688122.1 315385..316881(+) (amiC) [Streptococcus mitis strain SK637]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=284688 SK637_RS01660 WP_033688122.1 315385..316881(+) (amiC) [Streptococcus mitis strain SK637]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGGTCATTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCGACAACTGCTGATAAACGTG
ATAACTATGAGAATACTGTCTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGC
CAGATGGATGCTTCTGTAACCGTTGAAGCCAATGATACCAACAAGGCCATCTATGAAAAATACATTAAACAAATCGGTCA
TGGTTGGACCCTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACTCGTGAAATCCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGATCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAGCGTTACCTT
CGTTTCGAAAACGATCCAGCGATCGGATGGTCATTGGTCGGTTCAGGAACAAAACACAAATATCTCTTGTACTTCAACAG
TCAGTTCCCGTTTGTGCATCAAAATTTTGTGAACATTAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTTATTACTCAAGGACAAGGGCAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTACAAATCACCTAGTCAGGCTGATTCTCGTGAAGTAGCTAACTATGGGAAAGATGACCCATA
TACTGCAACTGAAAGCAACTACCAATATCCTTCTATGATTGCCAGCTCTGCAGTCGTCGGATTGATTGGTTTGGTGATTT
CTTATGCAATTGCAGTACCTCTTGGTTCAGCTATGGCTCGCTTTAAGAACACTTGGATTGATAGTTTCTCAACAGGGGCT
TTGACCTTCTTGATGGCTCTTCCAACAATTGCCTTAGTTTATATCGTTCGTTTGATTGGATCATCAATCGGTCTTCCAGA
TTCATTCCCTATCTTGGGTGCTGGAGATTGGCGTTCTTACGTTTTACCGGCAGTTATCCTTGGTTTATTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCTCGTGCTAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCACTTGTTTCAGGTATTCCTGGAGCTGTTAT
CGGGGTTATCGGTGGTGCCACTCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCCAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment