Detailed information NTG0284577

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: C9I44_RS05875
• Genome accession: NZ_CP028386
• Coordinates: 1158836..1159705 (-)
• Length: 289 a.a.
• NCBI ID: WP_004257242.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain IBB3403
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1153836..1164705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9I44_RS11420 (C9I44_05775)	-	1154812..1155034 (+)	223	Protein_1158	hypothetical protein	-
C9I44_RS05865 (C9I44_05780)	trmFO	1155107..1156450 (-)	1344	WP_004257249.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
C9I44_RS05870 (C9I44_05785)	topA	1156496..1158646 (-)	2151	WP_026063933.1	type I DNA topoisomerase	-
C9I44_RS05875 (C9I44_05790)	dprA	1158836..1159705 (-)	870	WP_004257242.1	DNA-processing protein DprA	Machinery gene
C9I44_RS05880 (C9I44_05795)	budA	1159792..1160490 (-)	699	WP_004257238.1	acetolactate decarboxylase	-
C9I44_RS05885 (C9I44_05800)	-	1160632..1162356 (-)	1725	WP_004257235.1	ABC transporter permease/substrate binding protein	-
C9I44_RS05890 (C9I44_05805)	-	1162349..1163551 (-)	1203	WP_004257230.1	quaternary amine ABC transporter ATP-binding protein	-
C9I44_RS05895 (C9I44_05810)	-	1163756..1164376 (-)	621	WP_004257227.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32860.03 Da
• Isoelectric Point: 9.5626

>NTDB_id=284577 C9I44_RS05875 WP_004257242.1 1158836..1159705(-) (dprA) [Lactococcus garvieae strain IBB3403]
MIRNFEILRLKKAGMSNLGILKLIDYQERHEAKLTLRQLARIAEVKAVPNFIESYKSQDVKRLREQYKTFPSFSILDDIY
PEWLKEMYNPPTLLFYQGNLKLLNFPKLGFVGSREMSKEAPKITYKLIEELKQSFVIVSGLARGVDTSSHVAAIKQQTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLVGEPPLKFHFPERNRIIAGLSRGIIVVEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNASGCNQLIQQGAAKLITHGQDILDEFYLYGDNFLP

Nucleotide

• Length: 870 bp

>NTDB_id=284577 C9I44_RS05875 WP_004257242.1 1158836..1159705(-) (dprA) [Lactococcus garvieae strain IBB3403]
ATGATTAGAAATTTTGAAATATTGCGTTTGAAAAAAGCAGGAATGTCGAATCTAGGGATTTTGAAACTGATTGACTATCA
AGAGAGGCATGAAGCAAAACTTACTTTACGACAGTTAGCGAGGATCGCAGAAGTCAAAGCTGTCCCTAATTTTATTGAGA
GTTACAAGAGTCAGGATGTGAAACGACTTCGAGAGCAATATAAGACCTTCCCCTCCTTTTCCATCTTAGACGACATTTAT
CCTGAATGGCTGAAAGAAATGTATAATCCCCCGACCCTCCTTTTTTATCAAGGAAATCTTAAGTTGCTTAACTTCCCTAA
ACTCGGATTTGTCGGGAGCCGTGAGATGTCTAAGGAAGCACCTAAAATTACATACAAGCTTATTGAGGAATTAAAACAAA
GCTTTGTTATAGTGAGCGGGTTAGCACGCGGTGTTGACACTTCTAGTCATGTAGCTGCTATAAAGCAACAAACACCAACC
ATTGCTGTCATTGGTAACGGCTTAGATATTAGTTATCCAAAAGAAAATCGTAAATTACAAGAGTATTTAGCAACTCATGA
ATTGGTTTTATCAGAATACCTTGTAGGAGAGCCGCCCCTTAAGTTTCATTTCCCAGAGAGAAATAGAATCATTGCGGGTC
TTTCTCGTGGAATTATCGTTGTTGAAGCAAAGCAACGTAGCGGTAGCCTCATCACAAGTCGTTATGCCTTAGAGGGAAAT
AGAGAAGTCTTTGCTGTACCTGGAGATATTTTGAACAGAAATGCCTCTGGCTGTAATCAATTAATCCAGCAAGGTGCAGC
CAAGCTTATCACTCATGGTCAAGATATTTTGGATGAATTTTATTTATATGGGGATAATTTCCTTCCTTAA

Domains

Predicted by InterproScan.

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (2-63)

• DNA recombination-mediator protein A (DNA_processg_A) (74-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Lactococcus lactis subsp. cremoris KW2	63.604	97.924	0.623
dprA	Streptococcus mutans UA159	56.318	95.848	0.54
dprA/cilB/dalA	Streptococcus pneumoniae D39	54.48	96.54	0.526
dprA/cilB/dalA	Streptococcus pneumoniae R6	54.48	96.54	0.526
dprA/cilB/dalA	Streptococcus mitis SK321	54.48	96.54	0.526
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	54.48	96.54	0.526
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	54.48	96.54	0.526
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	53.763	96.54	0.519
dprA	Haemophilus influenzae Rd KW20	37.329	100	0.377
dprA	Latilactobacillus sakei subsp. sakei 23K	39.35	95.848	0.377