Detailed information NTG0284565

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: C9I44_RS02100
• Genome accession: NZ_CP028386
• Coordinates: 407162..407761 (-)
• Length: 199 a.a.
• NCBI ID: WP_003134020.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain IBB3403
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 402162..412761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9I44_RS02090 (C9I44_02060)	-	402214..403437 (+)	1224	WP_003134018.1	FtsW/RodA/SpoVE family cell cycle protein	-
C9I44_RS02095 (C9I44_02065)	-	403638..407057 (+)	3420	WP_003134019.1	pyruvate carboxylase	-
C9I44_RS02100 (C9I44_02070)	clpP	407162..407761 (-)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
C9I44_RS02105 (C9I44_02075)	-	407938..408315 (+)	378	WP_003134021.1	VOC family protein	-
C9I44_RS02110 (C9I44_02080)	-	408375..408905 (+)	531	WP_003134023.1	hypothetical protein	-
C9I44_RS02115 (C9I44_02085)	spx	409068..409466 (+)	399	WP_003134024.1	transcriptional regulator Spx	-
C9I44_RS02120 (C9I44_02090)	-	409603..410373 (+)	771	WP_003134025.1	TatD family hydrolase	-
C9I44_RS02125 (C9I44_02095)	rnmV	410373..410918 (+)	546	WP_003134027.1	ribonuclease M5	-
C9I44_RS02130 (C9I44_02100)	-	410915..411841 (+)	927	WP_003134028.1	ABC transporter ATP-binding protein	-
C9I44_RS02135 (C9I44_02105)	-	411834..412604 (+)	771	WP_003134031.1	ABC transporter permease	-

Sequence

Protein

• Length: 199 a.a.
• Molecular weight: 21787.90 Da
• Isoelectric Point: 4.7242

>NTDB_id=284565 C9I44_RS02100 WP_003134020.1 407162..407761(-) (clpP) [Lactococcus garvieae strain IBB3403]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

• Length: 600 bp

>NTDB_id=284565 C9I44_RS02100 WP_003134020.1 407162..407761(-) (clpP) [Lactococcus garvieae strain IBB3403]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCAATTGTCGAT
ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC
TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCACAAGAAACATTAGATTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553