Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   C9I44_RS00945 Genome accession   NZ_CP028386
Coordinates   174113..174529 (+) Length   138 a.a.
NCBI ID   WP_003133718.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169113..179529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS00905 (C9I44_00890) - 169772..170047 (+) 276 WP_233239300.1 hypothetical protein -
  C9I44_RS00910 (C9I44_00895) - 170054..170275 (+) 222 WP_165714663.1 hemolysin XhlA family protein -
  C9I44_RS00915 (C9I44_00900) - 170287..170520 (+) 234 WP_233239195.1 holin -
  C9I44_RS00920 (C9I44_00905) - 170521..170748 (+) 228 Protein_174 hypothetical protein -
  C9I44_RS00925 (C9I44_00910) - 170814..171395 (+) 582 WP_233239301.1 HNH endonuclease -
  C9I44_RS11390 (C9I44_00915) - 171722..172294 (+) 573 Protein_176 hypothetical protein -
  C9I44_RS00935 (C9I44_00920) - 172498..173463 (+) 966 WP_198493913.1 DUF3644 domain-containing protein -
  C9I44_RS00940 (C9I44_00925) comYC 173872..174138 (+) 267 WP_195212879.1 competence type IV pilus major pilin ComGC Machinery gene
  C9I44_RS00945 (C9I44_00930) comGD 174113..174529 (+) 417 WP_003133718.1 competence type IV pilus minor pilin ComGD Machinery gene
  C9I44_RS11325 (C9I44_00935) comGE 174561..174794 (+) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  C9I44_RS00955 (C9I44_00940) comGF 174775..175215 (+) 441 WP_003133720.1 competence type IV pilus minor pilin ComGF -
  C9I44_RS00960 (C9I44_00945) - 175448..176293 (+) 846 WP_003133722.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  C9I44_RS00965 (C9I44_00950) - 176379..177248 (-) 870 WP_003133725.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15806.49 Da        Isoelectric Point: 10.0791

>NTDB_id=284552 C9I44_RS00945 WP_003133718.1 174113..174529(+) (comGD) [Lactococcus garvieae strain IBB3403]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMVKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=284552 C9I44_RS00945 WP_003133718.1 174113..174529(+) (comGD) [Lactococcus garvieae strain IBB3403]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACCCAACGCATGGCGGGGCTAAAGGGGCAGCAACAGACGTTGAGTGCGAGTAATGGTGCACTCTATAGCCAA
GAGGAAATGGTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.909

95.652

0.391
  comYD Streptococcus mutans UA159

40.909

95.652

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362

Multiple sequence alignment