Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UTEX3055_RS04420 Genome accession   NZ_CP033061
Coordinates   857145..857507 (-) Length   120 a.a.
NCBI ID   WP_011377525.1    Uniprot ID   Q31RI6
Organism   Synechococcus elongatus UTEX 3055     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 852145..862507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS04395 - 852834..853112 (-) 279 WP_126147120.1 type II toxin-antitoxin system RelE/ParE family toxin -
  UTEX3055_RS04400 - 853109..853288 (-) 180 Protein_885 addiction module protein -
  UTEX3055_RS04405 - 853655..854302 (-) 648 WP_011243520.1 Coq4 family protein -
  UTEX3055_RS04410 - 854438..855526 (-) 1089 WP_011243521.1 potassium channel protein -
  UTEX3055_RS04415 comA 855688..857127 (+) 1440 WP_126147122.1 phospholipase D-like domain-containing protein Machinery gene
  UTEX3055_RS04420 ssb 857145..857507 (-) 363 WP_011377525.1 single-stranded DNA-binding protein Machinery gene
  UTEX3055_RS04425 - 857736..858737 (+) 1002 WP_039755477.1 rod shape-determining protein -
  UTEX3055_RS04430 mreC 858762..859511 (+) 750 WP_011243525.1 rod shape-determining protein MreC -
  UTEX3055_RS04435 mreD 859472..860155 (+) 684 WP_126147123.1 rod shape-determining protein MreD -
  UTEX3055_RS04440 ftsH3 860424..862265 (-) 1842 WP_011243527.1 ATP-dependent zinc metalloprotease FtsH3 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13556.21 Da        Isoelectric Point: 7.9768

>NTDB_id=281705 UTEX3055_RS04420 WP_011377525.1 857145..857507(-) (ssb) [Synechococcus elongatus UTEX 3055]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRSRNDEPDWFNVEMWGREAQVAIDYVKKGSLIGISGALKIESWT
DRNNNQRTTPVVRANRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=281705 UTEX3055_RS04420 WP_011377525.1 857145..857507(-) (ssb) [Synechococcus elongatus UTEX 3055]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTCGGTCGTGACCCCGAAGCTCGTTACTTTGAGTCGGGTTCGGTCGT
TTGTAAGTTTTCCCTGGCGGTCAATCGCCGCAGCCGCAATGATGAGCCTGATTGGTTCAACGTTGAGATGTGGGGCCGCG
AAGCCCAGGTTGCGATCGACTATGTCAAGAAAGGCAGTCTGATCGGCATCAGTGGTGCTCTCAAGATTGAGAGCTGGACT
GATCGCAACAACAATCAGCGCACCACACCCGTCGTCCGGGCCAATCGTCTTGAGCTGCTGGGCTCGCGCCGAGATCAAGA
GGGCGGCATGGCTCCCCGCGATCCAGACAGCGATCTGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31RI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375

Multiple sequence alignment