Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   UTEX3055_RS03055 Genome accession   NZ_CP033061
Coordinates   604654..605589 (+) Length   311 a.a.
NCBI ID   WP_126146975.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 599654..610589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS03030 - 599808..600737 (-) 930 WP_126146972.1 tyrosine-type recombinase/integrase -
  UTEX3055_RS03040 - 601173..601613 (+) 441 WP_126146973.1 VOC family protein -
  UTEX3055_RS03045 - 601610..602983 (+) 1374 WP_011243263.1 MFS transporter -
  UTEX3055_RS03050 - 603086..604429 (+) 1344 WP_126146974.1 OB-fold nucleic acid binding domain-containing protein -
  UTEX3055_RS03055 rpoS 604654..605589 (+) 936 WP_126146975.1 RpoD/SigA family RNA polymerase sigma factor Regulator
  UTEX3055_RS03060 - 605620..606936 (+) 1317 WP_126146976.1 cytosine deaminase -
  UTEX3055_RS03065 - 606939..608288 (+) 1350 WP_011377626.1 FAD-binding oxidoreductase -
  UTEX3055_RS03070 - 608290..609060 (-) 771 WP_126146977.1 HAD-IIB family hydrolase -
  UTEX3055_RS03075 - 609057..609719 (-) 663 WP_011243269.1 FHA domain-containing protein -
  UTEX3055_RS03080 - 609820..610533 (-) 714 WP_126146978.1 DevA family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35613.89 Da        Isoelectric Point: 8.3029

>NTDB_id=281698 UTEX3055_RS03055 WP_126146975.1 604654..605589(+) (rpoS) [Synechococcus elongatus UTEX 3055]
MNVQERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKMLK
ANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKIS
RIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ
HEQILTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLRVLSQQPLCPEAC

Nucleotide


Download         Length: 936 bp        

>NTDB_id=281698 UTEX3055_RS03055 WP_126146975.1 604654..605589(+) (rpoS) [Synechococcus elongatus UTEX 3055]
ATGAACGTACAGGAACGCCGAAACCTGAACGCAGCGGTTGAGCGACACACCAGTGATCATGTCAGCTGGTATCTCAGTTC
AATCGGTAGAATTCCGCTCCTCACTGCCGAGGAAGAGGTTGAACTCTCACGCAAGGTTCAACTGATGATGGCATTGTTGG
AAAACCCAGATGCCGAGAGCAATTCAGAGAACCAAGCGGTCTTACAGGCCGGTCAAAGAGCGAAAACAAAAATGCTCAAA
GCCAACCTCCGGTTGGTTGTGAGTGTTGCGAAGAAATACCAGAATCAAGGCCTAGAACTACTCGACTTGATCCAAGAAGG
GTCACTTGGTTTAGAGCGAGCAGTTGAAAAATTTGACCCAGCCTTGGGTTATAAATTCTCGACCTACGCTTACTGGTGGA
TTCGCCAAAGCATGACTCGGGCGATCGACAATCATGCCCGCACGATTCGTCTTCCCATTCATGTCAGCGAGAAAATTAGC
CGCATCAAAAAAATGACGCGAGAGCTGACTCATCAGCTCAAGCGATTGCCCAGCCGTGCCGAAATCGCTGAGGCGTTAAA
GTTGCCGCTTCAAGATGTAGAAATGCTGCTCAGCCAATCGACCCCCTGCACCAGCTTGGATGCCCAAGCACGGGGCGACG
ATGGCCGCAGCTTCTTGGGAGACTTGATTCCGGATCCCAAGAGTCTAGAGCCGATGGACGCCATGGATCGCCACATCCAG
CACGAGCAAATCTTGACTTGGTTGGCACACCTGACCGAACGTGAGCAGCAGGTCTTGCAACTGCGCTTTGGTCTCCACGA
CGGCGAGCAACACACCTTGGCGGAAATTGGTCGGCGGCTGAATGTGTCCCGCGAACGGATTCGTCAAGTTGAAGCTCGGG
CACTGCAAAAACTGCGGGTCTTGAGTCAACAACCGCTTTGCCCAGAGGCTTGCTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(247-299)

Sigma-70 region 3 (Sigma70_r3)

(157-234)

Sigma-70 region 2 (Sigma70_r2)

(79-147)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(19-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.837

94.534

0.396

Multiple sequence alignment