Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   C5P47_RS07725 Genome accession   NZ_CP028140
Coordinates   1516122..1516664 (-) Length   180 a.a.
NCBI ID   WP_076612468.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS979     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511122..1521664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5P47_RS07700 (C5P47_07685) - 1512478..1513323 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  C5P47_RS07705 (C5P47_07690) - 1513388..1513948 (-) 561 WP_063629237.1 TIGR01440 family protein -
  C5P47_RS07710 (C5P47_07695) - 1513962..1514432 (-) 471 WP_011106596.1 ECF transporter S component -
  C5P47_RS07715 (C5P47_07700) - 1514422..1515186 (-) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C5P47_RS07720 (C5P47_07705) truA 1515176..1515925 (-) 750 WP_063629239.1 tRNA pseudouridine(38-40) synthase TruA -
  C5P47_RS07725 (C5P47_07710) comX/sigX/comX2/sigX2 1516122..1516664 (-) 543 WP_076612468.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21911.66 Da        Isoelectric Point: 10.0375

>NTDB_id=281608 C5P47_RS07725 WP_076612468.1 1516122..1516664(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS979]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=281608 C5P47_RS07725 WP_076612468.1 1516122..1516664(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS979]
GTGTCCTGTTGCTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTAAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.