Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   C7K40_RS02155 Genome accession   NZ_CP027771
Coordinates   383153..383335 (+) Length   60 a.a.
NCBI ID   WP_011184907.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 321952..388075 383153..383335 within 0


Gene organization within MGE regions


Location: 321952..388075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS01760 (C7K40_01760) - 321952..322848 (-) 897 WP_021299026.1 sulfite exporter TauE/SafE family protein -
  C7K40_RS01765 (C7K40_01765) - 323146..323898 (+) 753 WP_002983053.1 CppA N-terminal domain-containing protein -
  C7K40_RS01770 (C7K40_01770) - 323883..324833 (+) 951 WP_080262145.1 serine hydrolase domain-containing protein -
  C7K40_RS01775 (C7K40_01775) pflB 325013..327340 (-) 2328 WP_002988233.1 formate C-acetyltransferase -
  C7K40_RS01780 (C7K40_01780) dinB 327549..328643 (+) 1095 WP_023613138.1 DNA polymerase IV -
  C7K40_RS01785 (C7K40_01785) - 328736..329218 (-) 483 WP_023613151.1 hypothetical protein -
  C7K40_RS01790 (C7K40_01790) - 329287..331761 (-) 2475 WP_023613150.1 ATP-dependent RecD-like DNA helicase -
  C7K40_RS01795 (C7K40_01795) lepB 331819..332412 (-) 594 WP_002983074.1 signal peptidase I -
  C7K40_RS01800 (C7K40_01800) rnhC 332423..333325 (-) 903 WP_063629657.1 ribonuclease HIII -
  C7K40_RS01805 (C7K40_01805) - 333482..333790 (+) 309 WP_002993251.1 hypothetical protein -
  C7K40_RS01810 (C7K40_01810) - 333793..334338 (+) 546 WP_002993250.1 CvpA family protein -
  C7K40_RS01815 (C7K40_01815) - 334487..336826 (+) 2340 WP_023613147.1 endonuclease MutS2 -
  C7K40_RS01820 (C7K40_01820) - 336830..337330 (+) 501 WP_023613146.1 phosphatase PAP2 family protein -
  C7K40_RS01825 (C7K40_01825) trxA 337393..337725 (+) 333 WP_258850450.1 thioredoxin -
  C7K40_RS01830 (C7K40_01830) - 337777..338364 (-) 588 WP_023613156.1 helix-turn-helix transcriptional regulator -
  C7K40_RS01835 (C7K40_01835) mutY 338541..339695 (-) 1155 WP_023613149.1 A/G-specific adenine glycosylase -
  C7K40_RS01840 (C7K40_01840) - 339863..340156 (+) 294 WP_002983113.1 hypothetical protein -
  C7K40_RS01845 (C7K40_01845) rpsF 340329..340619 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  C7K40_RS01850 (C7K40_01850) ssb 340641..341132 (+) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  C7K40_RS01855 (C7K40_01855) rpsR 341297..341536 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  C7K40_RS01860 (C7K40_01860) - 341669..342325 (-) 657 WP_023610581.1 DUF1129 domain-containing protein -
  C7K40_RS01865 (C7K40_01865) - 342457..343401 (-) 945 WP_002983147.1 magnesium transporter CorA family protein -
  C7K40_RS01870 (C7K40_01870) - 343645..344742 (-) 1098 WP_042361562.1 site-specific integrase -
  C7K40_RS01875 (C7K40_01875) - 344918..345439 (-) 522 WP_020837688.1 hypothetical protein -
  C7K40_RS01880 (C7K40_01880) - 345450..345830 (-) 381 WP_002986894.1 ImmA/IrrE family metallo-endopeptidase -
  C7K40_RS01885 (C7K40_01885) - 345844..346203 (-) 360 WP_011054768.1 helix-turn-helix transcriptional regulator -
  C7K40_RS01890 (C7K40_01890) - 346622..346717 (-) 96 WP_020837683.1 type I toxin-antitoxin system Fst family toxin -
  C7K40_RS01895 (C7K40_01895) - 347352..347543 (+) 192 WP_020837679.1 hypothetical protein -
  C7K40_RS01900 (C7K40_01900) - 347555..348271 (+) 717 WP_063629658.1 phage antirepressor KilAC domain-containing protein -
  C7K40_RS09445 - 348304..348453 (+) 150 WP_002986888.1 hypothetical protein -
  C7K40_RS01905 (C7K40_01905) - 348450..348650 (-) 201 WP_002986887.1 KTSC domain-containing protein -
  C7K40_RS01910 (C7K40_01910) - 348726..348893 (+) 168 WP_002986885.1 hypothetical protein -
  C7K40_RS01920 (C7K40_01920) - 349139..349396 (+) 258 WP_002988339.1 hypothetical protein -
  C7K40_RS01925 (C7K40_01925) - 349425..349610 (+) 186 WP_063629659.1 hypothetical protein -
  C7K40_RS01930 (C7K40_01930) - 349704..349961 (+) 258 WP_019418742.1 hypothetical protein -
  C7K40_RS01935 (C7K40_01935) - 350083..350496 (+) 414 WP_172456386.1 DnaD domain protein -
  C7K40_RS01940 (C7K40_01940) - 350477..350710 (+) 234 WP_002985387.1 hypothetical protein -
  C7K40_RS01945 (C7K40_01945) - 350707..350847 (+) 141 WP_011017992.1 hypothetical protein -
  C7K40_RS01950 (C7K40_01950) - 350856..351062 (+) 207 WP_011017565.1 hypothetical protein -
  C7K40_RS01955 (C7K40_01955) - 351118..351450 (+) 333 WP_010922475.1 hypothetical protein -
  C7K40_RS01960 (C7K40_01960) - 351450..352439 (+) 990 WP_063629661.1 recombinase RecT -
  C7K40_RS01965 (C7K40_01965) - 352436..352636 (+) 201 WP_010922473.1 hypothetical protein -
  C7K40_RS01970 (C7K40_01970) - 352629..353426 (+) 798 WP_020837672.1 PD-(D/E)XK nuclease-like domain-containing protein -
  C7K40_RS01975 (C7K40_01975) - 353602..353940 (+) 339 WP_002990067.1 hypothetical protein -
  C7K40_RS01980 (C7K40_01980) - 353937..354449 (+) 513 WP_010922210.1 hypothetical protein -
  C7K40_RS01985 (C7K40_01985) - 354436..354630 (+) 195 WP_063629662.1 hypothetical protein -
  C7K40_RS01990 (C7K40_01990) - 354627..354896 (+) 270 WP_002993802.1 hypothetical protein -
  C7K40_RS01995 (C7K40_01995) - 354898..355530 (+) 633 WP_063629663.1 N-6 DNA methylase -
  C7K40_RS02000 (C7K40_02000) - 355929..356366 (+) 438 WP_011017574.1 DUF1492 domain-containing protein -
  C7K40_RS02005 (C7K40_02005) - 356528..357694 (+) 1167 WP_019418850.1 DNA modification methylase -
  C7K40_RS02010 (C7K40_02010) - 358037..358513 (+) 477 WP_010922073.1 hypothetical protein -
  C7K40_RS02015 (C7K40_02015) - 358516..359807 (+) 1292 Protein_337 PBSX family phage terminase large subunit -
  C7K40_RS02020 (C7K40_02020) - 359821..361323 (+) 1503 WP_080465144.1 phage portal protein -
  C7K40_RS02025 (C7K40_02025) - 361328..362806 (+) 1479 WP_063629665.1 phage minor capsid protein -
  C7K40_RS02030 (C7K40_02030) - 362778..363017 (+) 240 WP_002986829.1 hypothetical protein -
  C7K40_RS02035 (C7K40_02035) - 363079..363345 (+) 267 WP_011054745.1 hypothetical protein -
  C7K40_RS02040 (C7K40_02040) - 363471..364085 (+) 615 WP_011106689.1 hypothetical protein -
  C7K40_RS02045 (C7K40_02045) - 364089..364907 (+) 819 WP_010922080.1 N4-gp56 family major capsid protein -
  C7K40_RS02050 (C7K40_02050) - 364961..365377 (+) 417 WP_010922081.1 hypothetical protein -
  C7K40_RS02055 (C7K40_02055) - 365367..365699 (+) 333 WP_011888693.1 minor capsid protein -
  C7K40_RS02060 (C7K40_02060) - 365699..366055 (+) 357 WP_010922083.1 minor capsid protein -
  C7K40_RS02065 (C7K40_02065) - 366052..366450 (+) 399 WP_063629666.1 minor capsid protein -
  C7K40_RS02070 (C7K40_02070) - 366450..366911 (+) 462 WP_011018120.1 hypothetical protein -
  C7K40_RS02075 (C7K40_02075) - 366921..367355 (+) 435 WP_011888695.1 hypothetical protein -
  C7K40_RS02080 (C7K40_02080) - 367359..367940 (+) 582 WP_011888696.1 bacteriophage Gp15 family protein -
  C7K40_RS02085 (C7K40_02085) - 367930..371148 (+) 3219 WP_063629667.1 tape measure protein -
  C7K40_RS02090 (C7K40_02090) - 371187..371903 (+) 717 WP_010922089.1 distal tail protein Dit -
  C7K40_RS02095 (C7K40_02095) - 371900..374044 (+) 2145 WP_021775334.1 phage tail spike protein -
  C7K40_RS02100 (C7K40_02100) hylP 374041..375054 (+) 1014 WP_063629668.1 hyaluronidase HylP -
  C7K40_RS02105 (C7K40_02105) - 375069..376955 (+) 1887 WP_063629669.1 gp58-like family protein -
  C7K40_RS02110 (C7K40_02110) - 376967..377395 (+) 429 WP_023079239.1 DUF1617 family protein -
  C7K40_RS02115 (C7K40_02115) - 377398..378015 (+) 618 WP_063629670.1 DUF1366 domain-containing protein -
  C7K40_RS02120 (C7K40_02120) - 378027..378299 (+) 273 WP_011017397.1 hypothetical protein -
  C7K40_RS02125 (C7K40_02125) - 378296..378523 (+) 228 WP_003058873.1 phage holin -
  C7K40_RS02130 (C7K40_02130) - 378639..379841 (+) 1203 WP_020837640.1 glucosaminidase domain-containing protein -
  C7K40_RS02135 (C7K40_02135) - 379981..380505 (+) 525 WP_011017840.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  C7K40_RS02140 (C7K40_02140) - 380493..381359 (+) 867 WP_011888701.1 DUF334 domain-containing protein -
  C7K40_RS02145 (C7K40_02145) - 381409..381843 (-) 435 WP_011017966.1 hypothetical protein -
  C7K40_RS02150 (C7K40_02150) sda3 382115..382915 (-) 801 WP_011285611.1 streptodornase Sda3 -
  C7K40_RS02155 (C7K40_02155) prx 383153..383335 (+) 183 WP_011184907.1 hypothetical protein Regulator
  C7K40_RS02160 (C7K40_02160) uvrA 383562..386390 (+) 2829 WP_021340890.1 excinuclease ABC subunit UvrA -
  C7K40_RS02165 (C7K40_02165) - 386506..387579 (+) 1074 WP_002988490.1 Xaa-Pro peptidase family protein -
  C7K40_RS02170 (C7K40_02170) - 387614..388075 (+) 462 WP_002988493.1 deaminase -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6976.99 Da        Isoelectric Point: 4.2550

>NTDB_id=280441 C7K40_RS02155 WP_011184907.1 383153..383335(+) (prx) [Streptococcus pyogenes strain DMG1800716]
MLTYDEFKQAIDRGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTEEIVEEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=280441 C7K40_RS02155 WP_011184907.1 383153..383335(+) (prx) [Streptococcus pyogenes strain DMG1800716]
ATGCTAACATACGACGAGTTTAAACAAGCGATTGACCGTGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCACATGAGAAAGTAAAAAATGGAGAAGTTGTGACCGAGGAGATAGTGGAAGAAG
TGATGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS8232

85

100

0.85

  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS315

83.333

100

0.833

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

88.372

71.667

0.633

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment