Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K12_RS26615 Genome accession   NZ_CP027721
Coordinates   5956815..5958032 (+) Length   405 a.a.
NCBI ID   WP_041987279.1    Uniprot ID   A0A554PHX8
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5951815..5963032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K12_RS26600 (C4K12_5442) - 5952269..5955187 (+) 2919 WP_172833372.1 DUF748 domain-containing protein -
  C4K12_RS26605 (C4K12_5443) - 5955390..5955746 (-) 357 WP_009050906.1 BON domain-containing protein -
  C4K12_RS26610 (C4K12_5444) - 5956034..5956450 (-) 417 WP_009050907.1 pilin -
  C4K12_RS26615 (C4K12_5445) pilC 5956815..5958032 (+) 1218 WP_041987279.1 type II secretion system F family protein Machinery gene
  C4K12_RS26620 (C4K12_5446) pilD 5958035..5958907 (+) 873 WP_009050909.1 A24 family peptidase Machinery gene
  C4K12_RS26625 (C4K12_5447) coaE 5958904..5959527 (+) 624 WP_009045669.1 dephospho-CoA kinase -
  C4K12_RS26630 (C4K12_5448) yacG 5959524..5959727 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  C4K12_RS26635 (C4K12_5449) - 5959732..5959947 (-) 216 WP_009050911.1 hypothetical protein -
  C4K12_RS26640 (C4K12_5450) - 5960013..5960702 (-) 690 WP_009050912.1 energy-coupling factor ABC transporter permease -
  C4K12_RS26645 (C4K12_5451) - 5960699..5961166 (-) 468 WP_016703672.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44430.21 Da        Isoelectric Point: 10.4090

>NTDB_id=279338 C4K12_RS26615 WP_041987279.1 5956815..5958032(+) (pilC) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLVRAQLRKQGISPARIRKKSSSLFQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGALLLSVFGLR
HAHRRSPRFRHWLDAALLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=279338 C4K12_RS26615 WP_041987279.1 5956815..5958032(+) (pilC) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGGTCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGATCAGGAAGAAATCCA
GCTCGCTGTTCCAGCGCACGCCCCCGATCAAGGCTCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGTGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGTTTCACCAGTGCGCTGCGCAAGAGGCCTCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAAGCCGGCGCCCTGGAAACCCTGCTGGAGCGAGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACCCGAATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGCGCTCTGTTGCTCAGCGTGTTCGGCCTGCGT
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGCCCTGCTGAAACTGCCGTTGGTAGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAACCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAAGACGTGGCGACCGGCATG
CAGTTGCACTTTTCCATGCGCGCGTCCGGTATCTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAAGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A554PHX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.926

100

0.659
  pilC Acinetobacter baylyi ADP1

56.127

100

0.565
  pilC Acinetobacter baumannii D1279779

55.392

100

0.558
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio cholerae strain A1552

42.602

96.79

0.412
  pilC Vibrio campbellii strain DS40M4

39.801

99.259

0.395

Multiple sequence alignment