Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C12_RS06910 Genome accession   NZ_CP032857
Coordinates   1320028..1320675 (+) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315028..1325675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS06895 (D9C12_06895) glpD 1315199..1316866 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  D9C12_RS06900 (D9C12_06900) pgcA 1316998..1318743 (+) 1746 WP_069837393.1 phosphoglucomutase -
  D9C12_RS06905 (D9C12_06905) yhcY 1318892..1320031 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  D9C12_RS06910 (D9C12_06910) vraR 1320028..1320675 (+) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  D9C12_RS06915 (D9C12_06915) yhdA 1320672..1321196 (+) 525 WP_038829245.1 FMN-dependent NADPH-azoreductase -
  D9C12_RS06920 (D9C12_06920) yhdB 1321211..1321453 (-) 243 WP_003233373.1 YhdB family protein -
  D9C12_RS06925 (D9C12_06925) yhdC 1321654..1321977 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  D9C12_RS06930 (D9C12_06930) lytF 1322018..1323484 (-) 1467 WP_069837395.1 peptidoglycan endopeptidase LytF -
  D9C12_RS06935 (D9C12_06935) nsrR 1323636..1324076 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  D9C12_RS06940 (D9C12_06940) - 1324281..1325633 (-) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=279301 D9C12_RS06910 WP_069837394.1 1320028..1320675(+) (vraR) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=279301 D9C12_RS06910 WP_069837394.1 1320028..1320675(+) (vraR) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment