Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SPYM_RS01400 Genome accession   NC_009332
Coordinates   264339..264890 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes str. Manfredo     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 259339..269890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS01400 (SpyM50236) comX/sigX/comX2/sigX2 264339..264890 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  SPYM_RS01405 (SpyM50237) truA 265077..265826 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  SPYM_RS01410 (SpyM50238) - 265816..266580 (+) 765 WP_011888600.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SPYM_RS01415 (SpyM50239) - 266570..267040 (+) 471 WP_011888601.1 ECF transporter S component -
  SPYM_RS01420 (SpyM50240) - 267054..267614 (+) 561 WP_002995157.1 TIGR01440 family protein -
  SPYM_RS01425 (SpyM50241) - 267679..268524 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=27848 SPYM_RS01400 WP_010921894.1 264339..264890(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes str. Manfredo]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=27848 SPYM_RS01400 WP_010921894.1 264339..264890(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes str. Manfredo]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.