Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SSA_RS11685 Genome accession   NC_009009
Coordinates   2386438..2387610 (+) Length   390 a.a.
NCBI ID   WP_002901929.1    Uniprot ID   A0A3R9HQD5
Organism   Streptococcus sanguinis SK36     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2381438..2392610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS11660 (SSA_2378) comE 2383219..2383983 (-) 765 WP_002899529.1 competence system response regulator transcription factor ComE Regulator
  SSA_RS11665 (SSA_2379) comD 2383989..2385323 (-) 1335 WP_011837729.1 competence system sensor histidine kinase ComD -
  SSA_RS11670 (SSA_2394) - 2385351..2385458 (-) 108 WP_002905686.1 competence protein -
  SSA_RS11680 (SSA_2380) rlmH 2385755..2386234 (-) 480 WP_011837730.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SSA_RS11685 (SSA_2381) htrA 2386438..2387610 (+) 1173 WP_002901929.1 S1C family serine protease Regulator
  SSA_RS11690 (SSA_2382) spo0J 2387674..2388435 (+) 762 WP_033179249.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 390 a.a.        Molecular weight: 40827.59 Da        Isoelectric Point: 4.7432

>NTDB_id=27555 SSA_RS11685 WP_002901929.1 2386438..2387610(+) (htrA) [Streptococcus sanguinis SK36]
MKNSSNAIKKALLLFAVLIVGFIGGSLGNYVTTLVTSRVKMNGNSTTSVTTSYKNSTDISEAVKKVQNAVVSVITYAESS
SSVINDESSNDESQISSEGSGVIYKKDGKSAYLVTNTHVLNGSTNVDILLADGNKVPGEVVGSDVYSDISVVKISSEKVT
DVAEFGDSGSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSENGENISTTALQTDAAINPGNSGGPLINIQGQ
VIGITSSKISTNGQTSVEGMGFAIPSNDVVNIINQLEKNGTVTRPALGIQMMDLSNLTTSDFSKLNLPSSVKSGILVRSV
QQGMPADGKLQKNDVITKVDNTDVESTSDLQSALYKHSIGDEVEITYYRDGKSQTVKIKLTKSTKELSSN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=27555 SSA_RS11685 WP_002901929.1 2386438..2387610(+) (htrA) [Streptococcus sanguinis SK36]
ATGAAAAACTCTTCAAATGCCATCAAAAAGGCTTTATTGCTTTTTGCAGTGTTAATTGTAGGTTTTATCGGCGGAAGTTT
AGGGAATTATGTTACTACATTAGTAACTTCACGTGTAAAAATGAATGGAAATTCAACAACCAGTGTAACTACTTCATATA
AAAACTCTACTGACATTTCAGAAGCTGTGAAAAAGGTTCAAAATGCCGTTGTTTCAGTAATTACTTATGCTGAATCTTCC
AGCAGCGTTATCAATGATGAATCTTCCAACGATGAATCACAAATCTCCAGTGAAGGTTCTGGCGTAATTTATAAAAAAGA
TGGAAAATCAGCCTATCTGGTAACCAACACCCACGTTCTTAATGGATCAACCAATGTAGATATCTTACTAGCTGATGGAA
ACAAGGTTCCAGGTGAAGTAGTTGGATCAGATGTTTATTCAGATATCTCTGTCGTTAAAATTAGTTCTGAAAAAGTAACT
GATGTCGCTGAATTTGGAGATTCTGGTTCTCTTACAGTTGGTGAAACAGCAATCGCTATCGGAAGCCCTCTTGGAACAGA
ATACGCTAACTCTGTCACACAAGGAATTATTTCTAGTTTAGGCAGAAACGTTACGTTACAATCTGAAAATGGTGAAAATA
TTTCAACAACTGCATTGCAAACAGATGCTGCAATCAATCCTGGTAACTCTGGCGGCCCTTTGATTAACATCCAAGGACAA
GTTATTGGGATTACTTCAAGTAAGATTTCAACAAATGGGCAAACCTCTGTTGAAGGGATGGGATTTGCGATTCCGTCTAA
TGATGTCGTAAATATTATCAATCAACTTGAAAAAAATGGAACAGTCACACGTCCTGCTTTAGGAATTCAAATGATGGATT
TATCTAATCTGACAACTTCTGATTTTTCTAAATTAAATCTTCCTTCTTCAGTGAAATCAGGTATTCTTGTTCGCTCTGTT
CAGCAAGGAATGCCTGCTGATGGCAAACTTCAAAAAAATGATGTCATTACAAAAGTAGATAACACAGATGTGGAATCCAC
TAGTGACCTTCAGTCTGCTCTCTACAAGCATAGCATTGGAGATGAGGTAGAGATTACTTATTATCGAGATGGTAAATCTC
AAACAGTCAAAATCAAACTCACTAAATCAACAAAAGAGTTAAGCTCAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3R9HQD5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.677

100

0.687

  htrA Streptococcus mitis NCTC 12261

64.122

100

0.646

  htrA Streptococcus pneumoniae Rx1

64.122

100

0.646

  htrA Streptococcus pneumoniae D39

64.122

100

0.646

  htrA Streptococcus pneumoniae R6

64.122

100

0.646

  htrA Streptococcus pneumoniae TIGR4

64.122

100

0.646

  htrA Streptococcus mutans UA159

54.937

100

0.556


Multiple sequence alignment