Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SSA_RS11690 Genome accession   NC_009009
Coordinates   2387674..2388435 (+) Length   253 a.a.
NCBI ID   WP_033179249.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2382674..2393435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS11660 (SSA_2378) comE 2383219..2383983 (-) 765 WP_002899529.1 competence system response regulator transcription factor ComE Regulator
  SSA_RS11665 (SSA_2379) comD 2383989..2385323 (-) 1335 WP_011837729.1 competence system sensor histidine kinase ComD -
  SSA_RS11670 (SSA_2394) - 2385351..2385458 (-) 108 WP_002905686.1 competence protein -
  SSA_RS11680 (SSA_2380) rlmH 2385755..2386234 (-) 480 WP_011837730.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SSA_RS11685 (SSA_2381) htrA 2386438..2387610 (+) 1173 WP_002901929.1 S1C family serine protease Regulator
  SSA_RS11690 (SSA_2382) spo0J 2387674..2388435 (+) 762 WP_033179249.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29389.11 Da        Isoelectric Point: 9.1311

>NTDB_id=27556 SSA_RS11690 WP_033179249.1 2387674..2388435(+) (spo0J) [Streptococcus sanguinis SK36]
MENFQYIALKDIRTNPYQPRKEFSQKKIEELAASIKENGLIQPIILRKSSLFGYEILAGERRFRAASFLGLETIPAVVKE
LSDDDMLKQAIIENLQREDLNPIEEAESYQNLIDKGLTHDEIAKIMGKSRPYISNIVRLLQLSKEVRQAIKEEEISQGHS
RLLVPLKEEEQLLWLNKICREDLSVRAVEKLLQQKKSLKKKPNKEIFAKSEEEKIKKILGLEVSIQLKNQSKGKLIIPFE
SEEEYQRIINSFK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=27556 SSA_RS11690 WP_033179249.1 2387674..2388435(+) (spo0J) [Streptococcus sanguinis SK36]
ATGGAAAACTTTCAATATATTGCACTTAAAGACATTCGAACCAATCCTTATCAGCCTCGTAAAGAGTTTTCACAAAAAAA
GATTGAAGAATTAGCGGCATCAATCAAAGAAAATGGTCTCATTCAGCCAATCATTCTTCGGAAATCTTCACTTTTTGGTT
ATGAAATTTTAGCAGGAGAACGGAGATTTAGAGCTGCCTCTTTTCTTGGCCTAGAAACGATCCCAGCTGTCGTCAAAGAA
TTATCTGATGATGACATGCTGAAACAGGCCATTATCGAAAATCTTCAAAGAGAAGACTTGAATCCTATAGAAGAGGCTGA
GTCTTATCAAAATTTGATTGACAAAGGCTTGACACATGATGAAATTGCTAAAATCATGGGAAAATCTAGACCCTATATCA
GCAATATTGTCAGACTTTTACAATTATCCAAAGAAGTTCGTCAAGCTATCAAGGAAGAAGAGATATCTCAAGGACATTCT
CGCCTGCTGGTCCCCTTAAAAGAAGAAGAACAGTTACTATGGCTGAACAAGATCTGTCGAGAAGATTTATCGGTTCGAGC
AGTTGAAAAGCTTCTTCAGCAAAAAAAGAGTCTCAAAAAGAAACCTAATAAAGAAATATTTGCTAAATCTGAAGAGGAAA
AAATTAAAAAAATTCTCGGTCTGGAAGTTTCTATTCAGTTAAAAAACCAGAGTAAAGGAAAGCTGATTATTCCTTTTGAA
AGCGAAGAAGAATATCAAAGAATTATAAACAGTTTTAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-194)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

52.988

99.209

0.526

Multiple sequence alignment