Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   C5695_RS17095 Genome accession   NZ_CP027116
Coordinates   3291922..3292518 (+) Length   198 a.a.
NCBI ID   WP_034660066.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3286922..3297518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS17070 (C5695_17140) nikA 3287431..3289062 (-) 1632 WP_117731841.1 nickel ABC transporter substrate-binding protein -
  C5695_RS17080 (C5695_17145) - 3289385..3290554 (-) 1170 WP_117731843.1 macrolide family glycosyltransferase -
  C5695_RS17085 (C5695_17150) - 3290814..3291278 (-) 465 WP_117731845.1 DinB family protein -
  C5695_RS17095 (C5695_17160) clpP 3291922..3292518 (+) 597 WP_034660066.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  C5695_RS17100 (C5695_17165) - 3292578..3293156 (-) 579 WP_117731847.1 TIGR00730 family Rossman fold protein -
  C5695_RS17105 (C5695_17170) - 3293293..3293622 (+) 330 WP_117731849.1 MazG-like family protein -
  C5695_RS17110 (C5695_17175) - 3293651..3295273 (-) 1623 WP_117731851.1 SulP family inorganic anion transporter -
  C5695_RS17115 (C5695_17180) - 3295311..3295892 (-) 582 WP_117731853.1 carbonic anhydrase -
  C5695_RS17120 (C5695_17185) - 3296447..3297424 (+) 978 WP_117731856.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.99 Da        Isoelectric Point: 4.6141

>NTDB_id=275075 C5695_RS17095 WP_034660066.1 3291922..3292518(+) (clpP) [Bacillus pumilus strain 145]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=275075 C5695_RS17095 WP_034660066.1 3291922..3292518(+) (clpP) [Bacillus pumilus strain 145]
ATGAATTTAATACCTACAGTCATTGAACAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATTACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTTTCAACCATTTGTATTGGTATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGAGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGACAAATTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGCGACAACTTCAAAACAGCGGAAGAAGCTCTTGAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.893

99.495

0.924
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535

Multiple sequence alignment