Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RL01_RS00330 | Genome accession | NZ_CP026957 |
| Coordinates | 56948..57418 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain FDAARGOS_43 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 45585..86926 | 56948..57418 | within | 0 |
Gene organization within MGE regions
Location: 45585..86926
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RL01_RS00240 (RL01_00240) | - | 45585..46622 (-) | 1038 | WP_000857194.1 | tyrosine-type recombinase/integrase | - |
| RL01_RS00245 (RL01_00245) | sek | 46706..47434 (-) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| RL01_RS00250 (RL01_00250) | seq | 47458..48186 (-) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| RL01_RS00255 (RL01_00255) | - | 48382..49152 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| RL01_RS00260 (RL01_00260) | - | 49311..49535 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| RL01_RS00265 (RL01_00265) | - | 49553..49813 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| RL01_RS00270 (RL01_00270) | - | 49837..50376 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| RL01_RS00275 (RL01_00275) | - | 50433..51182 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| RL01_RS00280 (RL01_00280) | - | 51198..51395 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| RL01_RS00285 (RL01_00285) | - | 51426..51566 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| RL01_RS00290 (RL01_00290) | - | 51581..52213 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| RL01_RS00295 (RL01_00295) | - | 52272..52592 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| RL01_RS00300 (RL01_00300) | - | 52589..52750 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| RL01_RS00305 (RL01_00305) | - | 52843..53103 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| RL01_RS00310 (RL01_00310) | - | 53112..53375 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| RL01_RS00315 (RL01_00315) | - | 53372..55327 (+) | 1956 | WP_047211354.1 | AAA family ATPase | - |
| RL01_RS00320 (RL01_00320) | - | 55329..56249 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| RL01_RS00325 (RL01_00325) | - | 56330..56947 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| RL01_RS00330 (RL01_00330) | ssbA | 56948..57418 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| RL01_RS00335 (RL01_00335) | - | 57448..58341 (+) | 894 | WP_000148328.1 | DnaD domain protein | - |
| RL01_RS00340 (RL01_00340) | - | 58348..58566 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| RL01_RS00345 (RL01_00345) | - | 58575..58979 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RL01_RS00350 (RL01_00350) | - | 58992..59276 (+) | 285 | Protein_68 | SA1788 family PVL leukocidin-associated protein | - |
| RL01_RS00360 (RL01_00360) | rinB | 59320..59469 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| RL01_RS00365 (RL01_00365) | - | 59628..60278 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| RL01_RS00370 (RL01_00370) | - | 60278..60478 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| RL01_RS00380 (RL01_00380) | - | 60501..60971 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| RL01_RS00385 (RL01_00385) | - | 61086..61538 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| RL01_RS00390 (RL01_00390) | - | 61554..61898 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| RL01_RS00395 (RL01_00395) | - | 62027..62494 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| RL01_RS00400 (RL01_00400) | - | 62497..64191 (+) | 1695 | WP_000133304.1 | terminase large subunit | - |
| RL01_RS00405 (RL01_00405) | - | 64205..64405 (+) | 201 | WP_000365299.1 | hypothetical protein | - |
| RL01_RS00410 (RL01_00410) | - | 64411..65661 (+) | 1251 | WP_000511065.1 | phage portal protein | - |
| RL01_RS00415 (RL01_00415) | - | 65654..66238 (+) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| RL01_RS00420 (RL01_00420) | - | 66326..67573 (+) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| RL01_RS00425 (RL01_00425) | - | 67609..67767 (+) | 159 | WP_001252099.1 | hypothetical protein | - |
| RL01_RS00430 (RL01_00430) | - | 67776..68108 (+) | 333 | WP_001177483.1 | head-tail connector protein | - |
| RL01_RS00435 (RL01_00435) | - | 68095..68430 (+) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| RL01_RS00440 (RL01_00440) | - | 68430..68807 (+) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| RL01_RS00445 (RL01_00445) | - | 68804..69184 (+) | 381 | WP_000611454.1 | hypothetical protein | - |
| RL01_RS00450 (RL01_00450) | - | 69185..70138 (+) | 954 | WP_000570652.1 | major tail protein | - |
| RL01_RS00455 (RL01_00455) | gpG | 70203..70649 (+) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| RL01_RS00460 (RL01_00460) | gpGT | 70709..70831 (+) | 123 | WP_000570353.1 | phage tail assembly chaperone GT | - |
| RL01_RS00465 (RL01_00465) | - | 70887..75536 (+) | 4650 | WP_001133533.1 | phage tail tape measure protein | - |
| RL01_RS00470 (RL01_00470) | - | 75536..77026 (+) | 1491 | WP_001154317.1 | phage distal tail protein | - |
| RL01_RS00475 (RL01_00475) | - | 77042..80824 (+) | 3783 | WP_000582131.1 | phage tail spike protein | - |
| RL01_RS00480 (RL01_00480) | - | 80817..80969 (+) | 153 | WP_001000058.1 | hypothetical protein | - |
| RL01_RS00485 (RL01_00485) | - | 81015..81302 (+) | 288 | WP_001262624.1 | hypothetical protein | - |
| RL01_RS00490 (RL01_00490) | - | 81358..81732 (+) | 375 | WP_000340977.1 | hypothetical protein | - |
| RL01_RS00495 (RL01_00495) | sea | 82105..82878 (+) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| RL01_RS00500 (RL01_00500) | pepG1 | 83029..83163 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| RL01_RS00505 (RL01_00505) | - | 83216..83323 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| RL01_RS00510 (RL01_00510) | - | 83375..83629 (+) | 255 | WP_000611512.1 | phage holin | - |
| RL01_RS00515 (RL01_00515) | - | 83641..84396 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| RL01_RS00520 (RL01_00520) | sak | 84587..85078 (+) | 492 | WP_000920039.1 | staphylokinase | - |
| RL01_RS00540 (RL01_00540) | - | 85726..86064 (+) | 339 | Protein_101 | SH3 domain-containing protein | - |
| RL01_RS00545 (RL01_00545) | scn | 86576..86926 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=273780 RL01_RS00330 WP_000934765.1 56948..57418(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_43]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=273780 RL01_RS00330 WP_000934765.1 56948..57418(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_43]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |