Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MAQU_RS04210 Genome accession   NC_008740
Coordinates   941541..943604 (+) Length   687 a.a.
NCBI ID   WP_236078963.1    Uniprot ID   -
Organism   Marinobacter nauticus VT8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 936541..948604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAQU_RS04190 (Maqu_0826) pilM 938692..939756 (+) 1065 WP_011784345.1 pilus assembly protein PilM Machinery gene
  MAQU_RS04195 (Maqu_0827) - 939756..940319 (+) 564 WP_011784346.1 PilN domain-containing protein -
  MAQU_RS04200 (Maqu_0828) - 940319..940930 (+) 612 WP_011784347.1 type 4a pilus biogenesis protein PilO -
  MAQU_RS04205 (Maqu_0829) - 940933..941475 (+) 543 WP_011784348.1 pilus assembly protein PilP -
  MAQU_RS04210 (Maqu_0830) pilQ 941541..943604 (+) 2064 WP_236078963.1 type IV pilus secretin PilQ family protein Machinery gene
  MAQU_RS04215 (Maqu_0831) aroK 943743..944333 (+) 591 WP_041656175.1 shikimate kinase AroK -
  MAQU_RS04220 (Maqu_0832) aroB 944302..945399 (+) 1098 WP_011784350.1 3-dehydroquinate synthase -
  MAQU_RS04225 (Maqu_0833) - 945432..946907 (+) 1476 WP_011784351.1 AAA family ATPase -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74111.37 Da        Isoelectric Point: 4.3402

>NTDB_id=27148 MAQU_RS04210 WP_236078963.1 941541..943604(+) (pilQ) [Marinobacter nauticus VT8]
MFKKLNVCVGVIAIGLWSGLASAVTLQDLSFSSLPGERLEVTMQFDGTPPEPSGYTIERPARIAVDLKDTTSALNQRSIP
LGTGNAQSVTVVETKDRTRLIFNLVELVPHDTVRTSNSLVMTIGGESDAVASNSSQPAQRTTTASPASSNALAGVDFRRG
KEGECRVIVDLGSSTATVNLNELGGRIRLAMPDLKVPADLRRRLDVTDFATPVTRIDTFVEDGHAVVEIRPEGDYDYIAY
QSGREFTVSVEALSQEEAETRREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQAL
DLILKTKGLDKRQIGNVLLVAPAEEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADVVALIQADEELISSRGFVSS
DARTNTISVRETAEKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSLGTLQEAR
DAASGGSNTISFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVTADRQTASIKSGEEIPY
QEATSSGATNIEFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVANGETVVLGGIFQSEV
ATQTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIKNDILQ

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=27148 MAQU_RS04210 WP_236078963.1 941541..943604(+) (pilQ) [Marinobacter nauticus VT8]
ATGTTCAAAAAACTCAATGTCTGCGTAGGCGTGATTGCCATCGGGTTATGGAGCGGCCTGGCCAGCGCGGTCACGCTGCA
GGACTTGTCGTTTTCGTCGCTGCCGGGGGAGCGGCTGGAAGTTACCATGCAGTTTGATGGCACGCCGCCGGAACCTTCGG
GCTATACCATAGAGCGGCCTGCCCGGATTGCGGTGGATCTTAAAGACACCACCAGCGCCTTGAACCAACGCAGTATCCCG
CTGGGTACCGGTAATGCTCAGAGCGTTACCGTGGTCGAAACCAAGGATCGCACCCGGTTGATCTTTAACCTGGTTGAATT
GGTGCCTCACGATACCGTGCGTACCAGCAACTCTCTGGTAATGACCATTGGTGGTGAGTCTGACGCCGTCGCCTCCAACT
CTTCTCAGCCGGCACAGCGTACGACGACGGCTTCTCCTGCATCGTCGAATGCGTTGGCTGGTGTTGATTTCCGTCGTGGT
AAAGAGGGCGAGTGTCGGGTGATCGTCGATCTGGGTAGCAGCACGGCGACTGTTAATCTGAACGAGTTGGGTGGCCGTAT
CCGCTTGGCCATGCCTGACCTTAAGGTTCCAGCCGATTTGCGCCGTCGTCTCGATGTAACTGATTTTGCAACGCCGGTTA
CTCGTATAGACACATTTGTGGAAGACGGACATGCGGTAGTGGAGATTCGCCCTGAGGGTGATTACGACTATATTGCGTAT
CAATCTGGTAGGGAGTTCACGGTAAGTGTTGAAGCGCTGAGCCAGGAAGAAGCGGAAACTCGTCGCGAGGAGAAGTTTCC
GTATACCGGTGAGAAGCTGTCCCTGAACTTCCAAGATATTGAGGTTCGCTCTGTGCTTCAGCTGATTGCTGATTTCACTG
GCCTGAACCTGGTTGCCAGTGACACGGTGGGAGGCAGTATCACTTTGCGTCTGCAGAATGTGCCCTGGGACCAGGCCTTG
GACCTGATACTCAAGACCAAAGGTTTGGATAAGCGTCAGATCGGCAACGTACTGCTGGTTGCCCCTGCTGAGGAAATTGC
GGCCCGTGAAAAGCTTGAGCTTGAAACCAACAAACAGATCGCTGAGTTAGCGCCGGTGCGGCTGGATATTATTCAGGTGA
ACTACGCCAAGGCGGCGGATGTGGTAGCTCTGATCCAGGCGGATGAAGAGCTCATCTCCTCCCGGGGTTTTGTGTCTTCT
GATGCCAGAACAAATACCATCAGTGTTCGCGAAACCGCTGAGAAACTGGAGGAAATTCGCCGGCTGGTATCCACGTGGGA
TGTCCCGGTTCGTCAGGTGTCAATTGAAGCTCGAATTGTCCGTGCACAAACTAACGTCGCAGAAGATCTTGGTGTTCGTT
GGGGAGGCGCGGCTTACAACGTCGACGGTGATGATGTGATTACTGTCGGTGGTTCTCTCGGGACACTGCAGGAAGCCAGA
GACGCCGCAAGCGGTGGTAGCAACACTATTTCTTTCCCGGGCGCTCTGGGCGTTGATCTTGGTGTGAGCGGTGATGGGGC
TTCTTCATTTGCAATCGGTTGGGGAAGTGATGACTTCTTGGTAGATCTTGAGCTCTCCGCTCTTGAGAGTGATGGTCGAG
CGGAGGTGGTTTCTCAACCTCGGGTTGTTACTGCTGATCGCCAGACAGCATCCATCAAGTCTGGTGAAGAAATTCCATAC
CAGGAGGCGACATCTAGTGGTGCAACGAACATCGAATTCAAGGAAGCGGTGCTTTCTCTCGAGGTGACCCCGCAGATCAC
GCCCGATGACAAGATCATTATGGATCTCGTGGTCAATCAGGATTCCCGGGGCGAAGTAACCGCAGGCATCCCGTCTATCA
ATACTAACGAAGTGACAACACAGGTGTTGGTTGCCAACGGTGAAACTGTTGTACTGGGCGGTATCTTCCAGTCTGAAGTT
GCCACTCAGACCACAAAAACTCCGTTCCTGGGTGACATCCCCTATCTCGGGCGTCTGTTCAAGCGCACCGAGCATATTGA
TGAGCGCAGCGAGCTTTTGATCTTTATTACGCCGAAGATCATCAAGAACGATATCTTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(527-682)

Bacterial type II/III secretion system short domain (Secretin_N)

(370-432)

AMIN domain (AMIN)

(39-118)

Secretin and TonB N terminus short domain (STN)

(296-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.122

100

0.504
  pilQ Acinetobacter baumannii strain A118

40.499

100

0.425
  pilQ Acinetobacter baumannii D1279779

40.499

100

0.425
  comQ Acinetobacter baylyi ADP1

40.736

100

0.419
  pilQ Legionella pneumophila strain ERS1305867

40.964

96.652

0.396
  pilQ Legionella pneumophila strain Lp02

40.813

96.652

0.394

Multiple sequence alignment