Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   C3496_RS19005 Genome accession   NZ_CP026608
Coordinates   3703833..3704414 (-) Length   193 a.a.
NCBI ID   WP_071728948.1    Uniprot ID   A0A4S4HPB8
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3698833..3709414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS18975 (C3496_19905) - 3698864..3699688 (-) 825 WP_071728950.1 PP2C family serine/threonine-protein phosphatase -
  C3496_RS18980 (C3496_19910) - 3699672..3700157 (-) 486 WP_071728949.1 HIT family protein -
  C3496_RS18985 (C3496_19915) - 3700260..3700430 (-) 171 WP_001992228.1 hypothetical protein -
  C3496_RS18990 (C3496_19920) - 3700724..3701560 (-) 837 WP_001084766.1 proline/glycine betaine ABC transporter permease -
  C3496_RS18995 (C3496_19925) - 3701553..3702758 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  C3496_RS19000 (C3496_19930) - 3702930..3703787 (+) 858 WP_062921274.1 glycine betaine ABC transporter substrate-binding protein -
  C3496_RS19005 (C3496_19935) clpP 3703833..3704414 (-) 582 WP_071728948.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  C3496_RS19010 (C3496_19940) - 3704436..3705122 (-) 687 WP_000337491.1 RNA polymerase subunit sigma-70 -
  C3496_RS19015 (C3496_19945) - 3705266..3705586 (+) 321 WP_001125379.1 2Fe-2S iron-sulfur cluster-binding protein -
  C3496_RS19020 (C3496_19950) rpiA 3705591..3706253 (+) 663 WP_071728946.1 ribose 5-phosphate isomerase A -
  C3496_RS19025 (C3496_19955) - 3706361..3706795 (+) 435 WP_088314299.1 GNAT family N-acetyltransferase -
  C3496_RS19030 (C3496_19960) - 3706926..3708293 (-) 1368 WP_136445021.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21148.44 Da        Isoelectric Point: 5.3394

>NTDB_id=270711 C3496_RS19005 WP_071728948.1 3703833..3704414(-) (clpP) [Bacillus anthracis strain HDZK-BYSB7]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVAKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=270711 C3496_RS19005 WP_071728948.1 3703833..3704414(-) (clpP) [Bacillus anthracis strain HDZK-BYSB7]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGTATGGGCTTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAGCGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTGCGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4HPB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.368

98.446

0.663
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

50.794

97.927

0.497
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487

Multiple sequence alignment