Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C2U31_RS05670 Genome accession   NZ_CP026124
Coordinates   1226291..1227736 (+) Length   481 a.a.
NCBI ID   WP_103271947.1    Uniprot ID   A0A2I8DEJ0
Organism   Achromobacter sp. AONIH1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221291..1232736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U31_RS05655 (C2U31_05655) leuA 1222245..1223954 (-) 1710 WP_103271944.1 2-isopropylmalate synthase -
  C2U31_RS05660 (C2U31_05660) - 1224496..1225476 (-) 981 WP_103271945.1 tripartite tricarboxylate transporter substrate binding protein -
  C2U31_RS05665 (C2U31_05665) - 1225669..1226292 (-) 624 WP_103271946.1 hypothetical protein -
  C2U31_RS05670 (C2U31_05670) rpoN/rpoN1 1226291..1227736 (+) 1446 WP_103271947.1 RNA polymerase factor sigma-54 Machinery gene
  C2U31_RS05675 (C2U31_05675) - 1227858..1228139 (+) 282 WP_103271948.1 bacterioferritin-associated ferredoxin -
  C2U31_RS05680 (C2U31_05680) - 1228318..1229187 (-) 870 WP_103271949.1 LysR substrate-binding domain-containing protein -
  C2U31_RS05685 (C2U31_05685) - 1229354..1230268 (+) 915 WP_103271950.1 DMT family transporter -
  C2U31_RS05690 (C2U31_05690) bfr 1230669..1231145 (+) 477 WP_103271951.1 bacterioferritin -
  C2U31_RS05695 (C2U31_05695) - 1231260..1231946 (-) 687 WP_103271952.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52519.99 Da        Isoelectric Point: 4.8752

>NTDB_id=267344 C2U31_RS05670 WP_103271947.1 1226291..1227736(+) (rpoN/rpoN1) [Achromobacter sp. AONIH1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPVAPEAQAESERESSVQDDEP
AAERDAPIEEMPGSGGVYPDEDGGPPEAAMPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AELEPDIDELKAALSLLQSFDPPGIGARDMAECLLLQLRHPDITRLPEAADPAALACAREICARHLPLLATGNVARLCAA
AGCDETRFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QAQLQQAKWMIRNVEQRFDTILRVSQAIVERQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTHIRQMVADENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQASV
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=267344 C2U31_RS05670 WP_103271947.1 1226291..1227736(+) (rpoN/rpoN1) [Achromobacter sp. AONIH1]
ATGCAAAATATTGTACCTATGACCCGTCCGATTTTAGAACTGCGTCCCGGTCAGCATCTGACGCTGACCCCACAGCTGCA
GCAATCGATCCGATTGTTGCAGTTGTCCACGCTCGAGCTGGAAGCCGAGATCTCGCAGGTGCTGGCGGACAACCCGCTGC
TCGAGCGCGACGACGAACCCGTGGCGCCCGAGGCGCAGGCAGAGTCCGAACGCGAGTCCTCGGTGCAGGACGACGAGCCG
GCGGCCGAGCGCGACGCGCCCATCGAGGAAATGCCCGGCTCCGGCGGGGTCTACCCAGACGAGGACGGCGGCCCGCCCGA
GGCCGCCATGCCGGACACGCTGCGCGAGCACCTGCTGGGCCAGCTGGTGCTGACCCGGGCGGCGCCGCGCGACGCCGCAT
TGGCCGCCCTGCTGATCGACGAGCTGGACGAGAACGGCTACCTGGGCTCGCCGCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGCTGGAGCCGGATATCGACGAGCTGAAGGCGGCGCTGTCGCTGCTGCAGTCCTTCGATCCACCCGGCATCGGCGC
GCGGGACATGGCGGAATGCCTGCTGTTGCAATTGCGCCACCCGGACATCACGCGCCTGCCCGAGGCGGCCGACCCGGCGG
CGCTGGCCTGCGCCCGCGAGATCTGCGCCCGTCACCTGCCGCTGCTGGCCACCGGCAATGTCGCCCGTCTGTGCGCGGCG
GCGGGGTGCGACGAAACCCGGTTCCGCGCCGCGCACGCCCTGATCCTGCGCCTGGAGCCGCGTCCGGGACGCGCCTGGAC
CGTGCCGGCCGCCGACTACGCCGTGCCGGACGTGATCGTGCGCAAAACCCGGCGCGGCTGGCAGGTCACGCTCAACAGCG
CCGCCGTACCGCGCCTGCAGATCAACGGCCTGTATGCGCAGATGCTGGGCAACCAGAAGGAATCGGCCCACGCTGGCCTG
CAGGCCCAGTTGCAGCAGGCCAAGTGGATGATCCGCAACGTCGAGCAGCGCTTCGACACCATCCTGCGCGTGTCCCAGGC
CATCGTCGAACGCCAGACGGCTTTCTTCAGCCAGGGGCCGGCGGCCATGCGTCCGCTGATCCTGAAGGACATCGCGGGCG
AACTGGGCCTGCACGAATCCACGATTTCGCGGGCCACGACGCAGAAGTACATGCTCACCCCGTTCGGTACGCTGGAGCTC
AAGCGCTTCTTCGGGACGGGGGTGTCGACCGATGGCGGCGATGCCACCTCGGCCACGGCGGTGCAGACCCATATCCGGCA
GATGGTGGCGGACGAGAACCGTGCCAAGCCGCTGTCCGACAGTCAGATCATGGAAAAGCTGGCCGACCAGGGCATCGTGA
TCGCCCGGCGCACGGTGGCCAAATACCGCGAGGCGCTGCGCATCGCGCCGGCGGCGCTGCGCAAGGCGCAGGCCTCGGTT
CGCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(109-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.705

100

0.526

Multiple sequence alignment