Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   C2E46_RS03390 Genome accession   NZ_CP026082
Coordinates   619586..619774 (+) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae strain YZ1605     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 611851..621404 619586..619774 within 0
IS/Tn 618540..619151 619586..619774 flank 435


Gene organization within MGE regions


Location: 611851..621404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E46_RS03330 (C2E46_03400) - 611851..612294 (+) 444 WP_001162136.1 flavodoxin -
  C2E46_RS03335 (C2E46_03405) - 612371..612646 (+) 276 WP_000418127.1 chorismate mutase -
  C2E46_RS03340 (C2E46_03410) - 612639..613835 (+) 1197 WP_000595708.1 voltage-gated chloride channel family protein -
  C2E46_RS03345 (C2E46_03415) rplS 614418..614765 (+) 348 WP_001068667.1 50S ribosomal protein L19 -
  C2E46_RS03355 (C2E46_03425) - 614990..616069 (-) 1080 WP_000264730.1 site-specific integrase -
  C2E46_RS03360 (C2E46_03430) - 616193..616396 (-) 204 WP_000505363.1 hypothetical protein -
  C2E46_RS03365 (C2E46_03435) - 616499..617056 (-) 558 WP_000891067.1 GTP pyrophosphokinase -
  C2E46_RS03370 (C2E46_03440) - 617058..617789 (-) 732 WP_000998374.1 S24 family peptidase -
  C2E46_RS11450 (C2E46_03445) - 618157..618315 (+) 159 WP_001104149.1 hypothetical protein -
  C2E46_RS03375 - 618350..618526 (+) 177 WP_001872966.1 hypothetical protein -
  C2E46_RS03380 (C2E46_03450) - 618540..619187 (-) 648 Protein_583 IS3 family transposase -
  C2E46_RS03385 (C2E46_03455) - 619365..619544 (+) 180 WP_000076709.1 CsbD family protein -
  C2E46_RS03390 (C2E46_03460) prx 619586..619774 (+) 189 WP_000027835.1 hypothetical protein Regulator
  C2E46_RS03395 (C2E46_03465) - 620199..621404 (+) 1206 WP_000078931.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=266893 C2E46_RS03390 WP_000027835.1 619586..619774(+) (prx) [Streptococcus agalactiae strain YZ1605]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=266893 C2E46_RS03390 WP_000027835.1 619586..619774(+) (prx) [Streptococcus agalactiae strain YZ1605]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468

Multiple sequence alignment