Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LACR_RS03365 Genome accession   NC_008527
Coordinates   646746..647345 (-) Length   199 a.a.
NCBI ID   WP_011675637.1    Uniprot ID   A0AA34TIF9
Organism   Lactococcus cremoris subsp. cremoris SK11     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 641746..652345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACR_RS03355 (LACR_0698) acnA 642902..645448 (+) 2547 Protein_633 aconitate hydratase AcnA -
  LACR_RS03360 (LACR_0699) icd 645468..646706 (+) 1239 WP_011675636.1 NADP-dependent isocitrate dehydrogenase -
  LACR_RS03365 (LACR_0700) clpP 646746..647345 (-) 600 WP_011675637.1 ATP-dependent Clp protease proteolytic subunit Regulator
  LACR_RS03370 (LACR_0701) - 647542..648072 (+) 531 WP_011675638.1 hypothetical protein -
  LACR_RS03375 (LACR_0702) spx 648242..648640 (+) 399 WP_003129597.1 transcriptional regulator Spx -
  LACR_RS03380 (LACR_0704) - 648941..650104 (-) 1164 WP_011675640.1 ABC transporter permease -
  LACR_RS03385 (LACR_0705) - 650161..651336 (-) 1176 WP_011675534.1 IS256-like element IS905 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22037.24 Da        Isoelectric Point: 4.7423

>NTDB_id=26556 LACR_RS03365 WP_011675637.1 646746..647345(-) (clpP) [Lactococcus cremoris subsp. cremoris SK11]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVLTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=26556 LACR_RS03365 WP_011675637.1 646746..647345(-) (clpP) [Lactococcus cremoris subsp. cremoris SK11]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCTAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

99.497

100

0.995
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

98.995

100

0.99
  clpP Streptococcus mutans UA159

86.735

98.492

0.854
  clpP Streptococcus thermophilus LMD-9

86.224

98.492

0.849
  clpP Streptococcus thermophilus LMG 18311

86.224

98.492

0.849
  clpP Streptococcus pyogenes MGAS315

85.204

98.492

0.839
  clpP Streptococcus pyogenes JRS4

85.204

98.492

0.839
  clpP Streptococcus pneumoniae D39

84.103

97.99

0.824
  clpP Streptococcus pneumoniae TIGR4

84.103

97.99

0.824
  clpP Streptococcus pneumoniae R6

84.103

97.99

0.824
  clpP Streptococcus pneumoniae Rx1

84.103

97.99

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553

Multiple sequence alignment