Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK237_RS05635 Genome accession   NZ_CP031377
Coordinates   1106761..1107441 (-) Length   226 a.a.
NCBI ID   WP_044769837.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2614     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101761..1112441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK237_RS05600 (DK237_05755) - 1101930..1102496 (+) 567 WP_002935243.1 CYTH domain-containing protein -
  DK237_RS05605 (DK237_05760) - 1102641..1103618 (+) 978 WP_009909926.1 ribose-phosphate diphosphokinase -
  DK237_RS05610 (DK237_05765) - 1103629..1104744 (+) 1116 WP_002935247.1 cysteine desulfurase family protein -
  DK237_RS05615 (DK237_05770) - 1104746..1105090 (+) 345 WP_002935248.1 DUF1831 domain-containing protein -
  DK237_RS05620 (DK237_05775) - 1105092..1105295 (+) 204 WP_009909930.1 DUF4649 family protein -
  DK237_RS05625 (DK237_05780) - 1105430..1106068 (+) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  DK237_RS05630 (DK237_05785) - 1106072..1106764 (+) 693 WP_024410473.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DK237_RS05635 (DK237_05790) radC 1106761..1107441 (-) 681 WP_044769837.1 DNA repair protein RadC Machinery gene
  DK237_RS05640 (DK237_05795) - 1107556..1108305 (-) 750 WP_002940809.1 class A sortase -
  DK237_RS05645 (DK237_05800) gyrA 1108312..1110756 (-) 2445 WP_024400682.1 DNA gyrase subunit A -
  DK237_RS05650 (DK237_05805) - 1110945..1111928 (+) 984 WP_002940816.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25713.92 Da        Isoelectric Point: 7.1078

>NTDB_id=265453 DK237_RS05635 WP_044769837.1 1106761..1107441(-) (radC) [Streptococcus suis strain ISU2614]
MYQIEFKEEAILPRERLVEVGAECLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=265453 DK237_RS05635 WP_044769837.1 1106761..1107441(-) (radC) [Streptococcus suis strain ISU2614]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGTGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGTATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(108-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482

Multiple sequence alignment