Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SPYM_RS02895 Genome accession   NC_009332
Coordinates   554146..554328 (+) Length   60 a.a.
NCBI ID   WP_011184907.1    Uniprot ID   -
Organism   Streptococcus pyogenes str. Manfredo     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 549146..559328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS10080 - 549519..549641 (+) 123 WP_029713948.1 hypothetical protein -
  SPYM_RS02870 (SpyM50530) - 549629..550834 (+) 1206 WP_011888700.1 glucosaminidase domain-containing protein -
  SPYM_RS02875 (SpyM50531) - 550974..551498 (+) 525 WP_011017840.1 Panacea domain-containing protein -
  SPYM_RS02880 (SpyM50532) - 551486..552352 (+) 867 WP_011888701.1 DUF334 domain-containing protein -
  SPYM_RS02885 (SpyM50533) - 552402..552836 (-) 435 WP_011888702.1 hypothetical protein -
  SPYM_RS02890 (SpyM50534) sda3 553108..553908 (-) 801 WP_011285611.1 streptodornase Sda3 -
  SPYM_RS02895 (SpyM50535) prx 554146..554328 (+) 183 WP_011184907.1 hypothetical protein Regulator
  SPYM_RS02900 (SpyM50536) rlmD 554519..555874 (+) 1356 WP_011888703.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  SPYM_RS02905 (SpyM50537) rocA 556540..557895 (+) 1356 WP_011888704.1 transcriptional regulator RocA -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6976.99 Da        Isoelectric Point: 4.2550

>NTDB_id=26471 SPYM_RS02895 WP_011184907.1 554146..554328(+) (prx) [Streptococcus pyogenes str. Manfredo]
MLTYDEFKQAIDRGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTEEIVEEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=26471 SPYM_RS02895 WP_011184907.1 554146..554328(+) (prx) [Streptococcus pyogenes str. Manfredo]
ATGCTAACATACGACGAGTTTAAACAAGCGATTGACCGTGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCACATGAGAAAGTAAAAAATGGAGAAGTTGTGACCGAGGAGATAGTGGAAGAAG
TGATGGTGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS8232

85

100

0.85
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS315

83.333

100

0.833
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS315

88.372

71.667

0.633
  prx Streptococcus pyogenes MGAS315

78.571

70

0.55

Multiple sequence alignment