Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C1S76_RS06185 Genome accession   NZ_CP025796
Coordinates   1282959..1283258 (-) Length   99 a.a.
NCBI ID   WP_045414933.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277959..1288258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS06160 - 1278423..1279637 (+) 1215 WP_005437583.1 pyridoxal phosphate-dependent aminotransferase -
  C1S76_RS06165 yfbR 1279721..1280305 (+) 585 WP_009707166.1 5'-deoxynucleotidase -
  C1S76_RS06170 - 1280309..1281643 (+) 1335 WP_196299057.1 anti-phage deoxyguanosine triphosphatase -
  C1S76_RS06175 - 1281664..1282281 (-) 618 WP_045414934.1 tRNA-uridine aminocarboxypropyltransferase -
  C1S76_RS06180 rrtA 1282285..1282836 (+) 552 WP_020196003.1 rhombosortase -
  C1S76_RS06185 comEA 1282959..1283258 (-) 300 WP_045414933.1 ComEA family DNA-binding protein Machinery gene
  C1S76_RS06190 ppiD 1283405..1285264 (-) 1860 WP_045414931.1 peptidylprolyl isomerase -
  C1S76_RS06195 - 1285479..1285751 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10791.54 Da        Isoelectric Point: 7.9987

>NTDB_id=263870 C1S76_RS06185 WP_045414933.1 1282959..1283258(-) (comEA) [Vibrio owensii strain 051011B]
MKWMLTLCLLLLAPMSWAEEGKSATTKAAKYDGIEITVNVNTATAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=263870 C1S76_RS06185 WP_045414933.1 1282959..1283258(-) (comEA) [Vibrio owensii strain 051011B]
ATGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCGATGAGCTGGGCGGAAGAAGGCAAGTCTGCAACGACAAA
AGCGGCCAAGTATGACGGCATTGAAATTACTGTTAATGTGAATACGGCTACCGCGGAAGAAATTGCGACACTACTGAATG
GTATTGGAACGAAAAAAGCGCAAGACATTGTTGAGTACCGAAATGAACATGGCCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGTATCTTACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

83.838

100

0.838
  comEA Vibrio parahaemolyticus RIMD 2210633

73.737

100

0.737
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

40.187

100

0.434
  comEA Acinetobacter baumannii strain A118

30.894

100

0.384

Multiple sequence alignment