Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | C1H71_RS09245 | Genome accession | NZ_CP025781 |
| Coordinates | 2059724..2060128 (-) | Length | 134 a.a. |
| NCBI ID | WP_374704457.1 | Uniprot ID | - |
| Organism | Iodobacter fluviatilis strain PCH194 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2054724..2065128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1H71_RS09230 (C1H71_09315) | - | 2055741..2056736 (-) | 996 | WP_130106299.1 | TRAP transporter substrate-binding protein | - |
| C1H71_RS09235 (C1H71_09320) | - | 2056869..2058761 (+) | 1893 | WP_188053692.1 | sensor histidine kinase | - |
| C1H71_RS09240 (C1H71_09325) | - | 2058758..2059351 (+) | 594 | WP_130106301.1 | response regulator transcription factor | - |
| C1H71_RS09245 (C1H71_09330) | pilA2 | 2059724..2060128 (-) | 405 | WP_374704457.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| C1H71_RS21410 | - | 2060567..2060818 (-) | 252 | WP_262488421.1 | Maf family protein | - |
| C1H71_RS09260 (C1H71_09345) | ltrA | 2061205..2062533 (+) | 1329 | WP_130104759.1 | group II intron reverse transcriptase/maturase | - |
| C1H71_RS09265 (C1H71_09350) | - | 2062729..2063166 (-) | 438 | WP_130106304.1 | ester cyclase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13703.73 Da Isoelectric Point: 8.1053
>NTDB_id=263747 C1H71_RS09245 WP_374704457.1 2059724..2060128(-) (pilA2) [Iodobacter fluviatilis strain PCH194]
MQKGFTLIELMIVVAIIGILAAVAIPSYQDYTKKAKYSEVLSISDSYKQAVALCHSDLNTFAGCNAGTQGIPATPTVATT
GLATGGTVSNGVINFTGTAAAGGYTFILSPSLNAQGTAITWAQSGNCLAAKYCK
MQKGFTLIELMIVVAIIGILAAVAIPSYQDYTKKAKYSEVLSISDSYKQAVALCHSDLNTFAGCNAGTQGIPATPTVATT
GLATGGTVSNGVINFTGTAAAGGYTFILSPSLNAQGTAITWAQSGNCLAAKYCK
Nucleotide
Download Length: 405 bp
>NTDB_id=263747 C1H71_RS09245 WP_374704457.1 2059724..2060128(-) (pilA2) [Iodobacter fluviatilis strain PCH194]
ATGCAAAAGGGTTTTACCCTGATCGAACTGATGATTGTTGTGGCTATTATTGGTATCTTAGCTGCTGTCGCTATTCCGTC
TTATCAGGATTACACCAAGAAAGCGAAGTACTCTGAAGTATTAAGTATTTCTGATTCTTACAAACAAGCTGTTGCATTAT
GCCACTCTGATTTGAATACCTTTGCCGGATGTAATGCAGGCACTCAGGGTATTCCTGCAACTCCCACTGTTGCTACTACT
GGTTTGGCTACTGGTGGTACTGTTTCTAATGGCGTGATTAATTTTACTGGAACAGCCGCAGCAGGTGGATATACTTTTAT
TTTATCTCCTTCTTTGAATGCTCAAGGTACGGCAATTACTTGGGCACAATCAGGTAATTGTTTAGCTGCTAAGTACTGCA
AATAA
ATGCAAAAGGGTTTTACCCTGATCGAACTGATGATTGTTGTGGCTATTATTGGTATCTTAGCTGCTGTCGCTATTCCGTC
TTATCAGGATTACACCAAGAAAGCGAAGTACTCTGAAGTATTAAGTATTTCTGATTCTTACAAACAAGCTGTTGCATTAT
GCCACTCTGATTTGAATACCTTTGCCGGATGTAATGCAGGCACTCAGGGTATTCCTGCAACTCCCACTGTTGCTACTACT
GGTTTGGCTACTGGTGGTACTGTTTCTAATGGCGTGATTAATTTTACTGGAACAGCCGCAGCAGGTGGATATACTTTTAT
TTTATCTCCTTCTTTGAATGCTCAAGGTACGGCAATTACTTGGGCACAATCAGGTAATTGTTTAGCTGCTAAGTACTGCA
AATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.128 |
99.254 |
0.507 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.128 |
99.254 |
0.507 |
| pilA | Haemophilus influenzae 86-028NP |
48.76 |
90.299 |
0.44 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
45.736 |
96.269 |
0.44 |
| comP | Acinetobacter baylyi ADP1 |
44.961 |
96.269 |
0.433 |
| pilA | Haemophilus influenzae Rd KW20 |
46.281 |
90.299 |
0.418 |
| pilA | Glaesserella parasuis strain SC1401 |
41.732 |
94.776 |
0.396 |