Detailed information NTG0262833

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: CWS34_RS10410
• Genome accession: NZ_CP025582
• Coordinates: 1976500..1976937 (-)
• Length: 145 a.a.
• NCBI ID: WP_101512092.1
• Uniprot ID: -
• Organism: Lacticaseibacillus paracasei strain HD1.7
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1971500..1981937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWS34_RS10370	-	1971991..1972701 (-)	711	WP_101512085.1	N-6 DNA methylase	-
CWS34_RS10375	-	1972698..1972940 (-)	243	WP_101512086.1	hypothetical protein	-
CWS34_RS10385	-	1973200..1973583 (-)	384	WP_101512088.1	DUF1064 domain-containing protein	-
CWS34_RS10390	-	1973586..1974035 (-)	450	WP_101512089.1	hypothetical protein	-
CWS34_RS10395	-	1974048..1974392 (-)	345	WP_003579409.1	hypothetical protein	-
CWS34_RS10400	-	1974394..1975656 (-)	1263	WP_101512090.1	DnaB-like helicase C-terminal domain-containing protein	-
CWS34_RS10405	-	1975653..1976483 (-)	831	WP_101512091.1	helix-turn-helix domain-containing protein	-
CWS34_RS10410	ssb	1976500..1976937 (-)	438	WP_101512092.1	single-stranded DNA-binding protein	Machinery gene
CWS34_RS10415	-	1976952..1977620 (-)	669	WP_101512338.1	putative HNHc nuclease	-
CWS34_RS10420	-	1977623..1978378 (-)	756	WP_101512093.1	ERF family protein	-
CWS34_RS10425	-	1978389..1978880 (-)	492	WP_101512094.1	siphovirus Gp157 family protein	-
CWS34_RS10430	-	1978898..1979101 (-)	204	WP_101512095.1	hypothetical protein	-
CWS34_RS16000	-	1979106..1979258 (-)	153	WP_189284857.1	hypothetical protein	-
CWS34_RS10440	-	1979340..1979663 (-)	324	WP_101512097.1	DUF771 domain-containing protein	-
CWS34_RS10445	-	1979714..1979971 (-)	258	WP_101512098.1	helix-turn-helix domain-containing protein	-
CWS34_RS10450	-	1979972..1980739 (-)	768	WP_101512099.1	phage antirepressor KilAC domain-containing protein	-
CWS34_RS10455	-	1980736..1980981 (-)	246	WP_015992507.1	helix-turn-helix transcriptional regulator	-
CWS34_RS10460	-	1981143..1981817 (+)	675	WP_101512100.1	LexA family transcriptional regulator	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 15913.43 Da
• Isoelectric Point: 4.8781

>NTDB_id=262833 CWS34_RS10410 WP_101512092.1 1976500..1976937(-) (ssb) [Lacticaseibacillus paracasei strain HD1.7]
MLNSVALTGRLTKDVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVFVTEVIVENFALLEPRQTSQEGQQRSANNPAATSQGNGFANNGQPVDVSDDDLPF

Nucleotide

• Length: 438 bp

>NTDB_id=262833 CWS34_RS10410 WP_101512092.1 1976500..1976937(-) (ssb) [Lacticaseibacillus paracasei strain HD1.7]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAAGACGTTGACCTTCGCTACACACAAAGCGGAACGGCAGTTGG
CTCATTTACGATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCTATCT
GGCGTAAGTCTGCTGAGAACTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGTCATATCCAAACACGT
ACGTACGATAACGCGCAAGGCCAGAGGGTATTCGTGACTGAGGTGATTGTTGAAAATTTCGCCTTGCTTGAGCCACGGCA
GACGTCTCAGGAAGGCCAACAACGATCGGCTAATAACCCAGCGGCTACAAGCCAAGGAAACGGTTTTGCCAACAATGGCC
AGCCAGTCGATGTCAGCGATGATGATCTTCCATTCTAG

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	58.235	100	0.683
ssbA	Bacillus subtilis subsp. subtilis str. 168	49.419	100	0.586
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.774	73.103	0.393
ssb	Neisseria gonorrhoeae MS11	32.558	100	0.386
ssb	Neisseria meningitidis MC58	31.977	100	0.379
ssbB	Streptococcus sobrinus strain NIDR 6715-7	37.931	100	0.379
ssb	Vibrio cholerae strain A1552	30.114	100	0.366