Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CWS34_RS10410 Genome accession   NZ_CP025582
Coordinates   1976500..1976937 (-) Length   145 a.a.
NCBI ID   WP_101512092.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain HD1.7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1942130..1983898 1976500..1976937 within 0


Gene organization within MGE regions


Location: 1942130..1983898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWS34_RS10170 - 1942130..1943419 (-) 1290 WP_101512056.1 LysM peptidoglycan-binding domain-containing protein -
  CWS34_RS10175 - 1943430..1943843 (-) 414 WP_071252206.1 phage holin -
  CWS34_RS10180 - 1943858..1944208 (-) 351 WP_225365899.1 hypothetical protein -
  CWS34_RS10185 - 1944189..1944320 (-) 132 WP_032779081.1 XkdX family protein -
  CWS34_RS10190 - 1944317..1944589 (-) 273 WP_101512006.1 hypothetical protein -
  CWS34_RS16140 - 1944601..1948044 (-) 3444 WP_225366400.1 phage tail spike protein -
  CWS34_RS10205 - 1948044..1949978 (-) 1935 WP_101512057.1 distal tail protein Dit -
  CWS34_RS10210 - 1949979..1954841 (-) 4863 WP_101512058.1 phage tail tape measure protein -
  CWS34_RS10215 gpG 1954964..1955377 (-) 414 WP_101512059.1 phage tail assembly chaperone G -
  CWS34_RS10220 - 1955476..1956093 (-) 618 WP_101512060.1 major tail protein -
  CWS34_RS10225 - 1956127..1956513 (-) 387 WP_101512061.1 phage tail protein -
  CWS34_RS10230 - 1956513..1956899 (-) 387 WP_101512062.1 HK97-gp10 family putative phage morphogenesis protein -
  CWS34_RS10235 - 1956899..1957228 (-) 330 WP_101512063.1 head-tail adaptor protein -
  CWS34_RS10240 - 1957218..1957577 (-) 360 WP_101512064.1 head-tail connector protein -
  CWS34_RS10245 - 1957588..1957827 (-) 240 WP_101512065.1 Ig-like domain-containing protein -
  CWS34_RS10250 - 1957845..1959047 (-) 1203 WP_101512066.1 phage major capsid protein -
  CWS34_RS10255 - 1959088..1959717 (-) 630 WP_101512067.1 HK97 family phage prohead protease -
  CWS34_RS10260 - 1959671..1960924 (-) 1254 WP_101512068.1 phage portal protein -
  CWS34_RS10265 - 1960930..1961121 (-) 192 WP_003661399.1 hypothetical protein -
  CWS34_RS10270 - 1961133..1962845 (-) 1713 WP_101512069.1 terminase large subunit -
  CWS34_RS10275 - 1962867..1963322 (-) 456 WP_003661401.1 P27 family phage terminase small subunit -
  CWS34_RS10280 - 1963521..1964315 (-) 795 WP_101512070.1 HNH endonuclease -
  CWS34_RS10285 - 1964305..1964886 (-) 582 WP_101512071.1 hypothetical protein -
  CWS34_RS10290 - 1964899..1965222 (-) 324 WP_101512072.1 hypothetical protein -
  CWS34_RS10295 - 1965225..1965554 (-) 330 WP_101512073.1 ribonucleoside-diphosphate reductase -
  CWS34_RS10300 - 1965541..1966758 (-) 1218 WP_101512074.1 GcrA family cell cycle regulator -
  CWS34_RS10305 - 1967129..1967560 (-) 432 WP_101512075.1 ArpU family phage packaging/lysis transcriptional regulator -
  CWS34_RS10310 - 1967629..1967847 (-) 219 WP_101512076.1 helix-turn-helix domain-containing protein -
  CWS34_RS10320 - 1967918..1968100 (-) 183 WP_101512077.1 hypothetical protein -
  CWS34_RS10325 - 1968084..1968320 (-) 237 WP_101512078.1 hypothetical protein -
  CWS34_RS10330 - 1968307..1968747 (-) 441 WP_101512079.1 YopX family protein -
  CWS34_RS10335 - 1968744..1968941 (-) 198 WP_225366401.1 hypothetical protein -
  CWS34_RS10340 - 1968938..1969318 (-) 381 WP_101512080.1 hypothetical protein -
  CWS34_RS15995 - 1969627..1969803 (-) 177 WP_189260170.1 hypothetical protein -
  CWS34_RS10350 - 1969793..1970344 (-) 552 WP_101512082.1 hypothetical protein -
  CWS34_RS10355 - 1970307..1970450 (-) 144 WP_101512083.1 acetyltransferase -
  CWS34_RS10360 - 1970463..1971071 (-) 609 WP_101512084.1 hypothetical protein -
  CWS34_RS10365 - 1971082..1972004 (-) 923 Protein_1883 site-specific integrase -
  CWS34_RS10370 - 1971991..1972701 (-) 711 WP_101512085.1 N-6 DNA methylase -
  CWS34_RS10375 - 1972698..1972940 (-) 243 WP_101512086.1 hypothetical protein -
  CWS34_RS10385 - 1973200..1973583 (-) 384 WP_101512088.1 DUF1064 domain-containing protein -
  CWS34_RS10390 - 1973586..1974035 (-) 450 WP_101512089.1 hypothetical protein -
  CWS34_RS10395 - 1974048..1974392 (-) 345 WP_003579409.1 hypothetical protein -
  CWS34_RS10400 - 1974394..1975656 (-) 1263 WP_101512090.1 DnaB-like helicase C-terminal domain-containing protein -
  CWS34_RS10405 - 1975653..1976483 (-) 831 WP_101512091.1 helix-turn-helix domain-containing protein -
  CWS34_RS10410 ssb 1976500..1976937 (-) 438 WP_101512092.1 single-stranded DNA-binding protein Machinery gene
  CWS34_RS10415 - 1976952..1977620 (-) 669 WP_101512338.1 putative HNHc nuclease -
  CWS34_RS10420 - 1977623..1978378 (-) 756 WP_101512093.1 ERF family protein -
  CWS34_RS10425 - 1978389..1978880 (-) 492 WP_101512094.1 siphovirus Gp157 family protein -
  CWS34_RS10430 - 1978898..1979101 (-) 204 WP_101512095.1 hypothetical protein -
  CWS34_RS16000 - 1979106..1979258 (-) 153 WP_189284857.1 hypothetical protein -
  CWS34_RS10440 - 1979340..1979663 (-) 324 WP_101512097.1 DUF771 domain-containing protein -
  CWS34_RS10445 - 1979714..1979971 (-) 258 WP_101512098.1 helix-turn-helix domain-containing protein -
  CWS34_RS10450 - 1979972..1980739 (-) 768 WP_101512099.1 phage antirepressor KilAC domain-containing protein -
  CWS34_RS10455 - 1980736..1980981 (-) 246 WP_015992507.1 helix-turn-helix transcriptional regulator -
  CWS34_RS10460 - 1981143..1981817 (+) 675 WP_101512100.1 LexA family transcriptional regulator -
  CWS34_RS10465 - 1981877..1982554 (+) 678 WP_101512101.1 transcriptional regulator -
  CWS34_RS10470 - 1982729..1983898 (+) 1170 WP_101512102.1 site-specific integrase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15913.43 Da        Isoelectric Point: 4.8781

>NTDB_id=262833 CWS34_RS10410 WP_101512092.1 1976500..1976937(-) (ssb) [Lacticaseibacillus paracasei strain HD1.7]
MLNSVALTGRLTKDVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVFVTEVIVENFALLEPRQTSQEGQQRSANNPAATSQGNGFANNGQPVDVSDDDLPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=262833 CWS34_RS10410 WP_101512092.1 1976500..1976937(-) (ssb) [Lacticaseibacillus paracasei strain HD1.7]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAAGACGTTGACCTTCGCTACACACAAAGCGGAACGGCAGTTGG
CTCATTTACGATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCTATCT
GGCGTAAGTCTGCTGAGAACTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGTCATATCCAAACACGT
ACGTACGATAACGCGCAAGGCCAGAGGGTATTCGTGACTGAGGTGATTGTTGAAAATTTCGCCTTGCTTGAGCCACGGCA
GACGTCTCAGGAAGGCCAACAACGATCGGCTAATAACCCAGCGGCTACAAGCCAAGGAAACGGTTTTGCCAACAATGGCC
AGCCAGTCGATGTCAGCGATGATGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.683
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.419

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

73.103

0.393
  ssb Neisseria gonorrhoeae MS11

32.558

100

0.386
  ssb Neisseria meningitidis MC58

31.977

100

0.379
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.931

100

0.379
  ssb Vibrio cholerae strain A1552

30.114

100

0.366

Multiple sequence alignment