Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK885_RS09360 Genome accession   NZ_CP031214
Coordinates   1846539..1846985 (-) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli strain C600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841539..1851985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK885_RS09310 (DK885_09310) sbmC 1842031..1842504 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  DK885_RS09315 (DK885_09315) yeeA 1842702..1843760 (+) 1059 WP_001200891.1 FUSC family protein -
  DK885_RS09320 (DK885_09320) tmaR 1843932..1844261 (+) 330 WP_000450409.1 DUF496 family protein -
  DK885_RS09325 (DK885_09325) - 1844362..1844544 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DK885_RS09330 (DK885_09330) - 1844616..1844744 (+) 129 Protein_1723 transposase domain-containing protein -
  DK885_RS09335 (DK885_09335) - 1845033..1845113 (-) 81 Protein_1724 hypothetical protein -
  DK885_RS09340 (DK885_09340) yeeW 1845159..1845353 (-) 195 WP_000988600.1 DUF5983 family protein -
  DK885_RS09345 (DK885_09345) cbtA 1845350..1845724 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DK885_RS09350 (DK885_09350) cbeA 1845813..1846181 (-) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DK885_RS09355 (DK885_09355) yeeT 1846255..1846476 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DK885_RS09360 (DK885_09360) radC 1846539..1846985 (-) 447 WP_000187523.1 RadC family protein Machinery gene
  DK885_RS09365 (DK885_09365) yeeR 1846982..1848514 (-) 1533 WP_001350525.1 protein YeeR -
  DK885_RS09370 (DK885_09370) agn43 1848635..1851754 (-) 3120 WP_000820410.1 autotransporter adhesin Ag43 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=262449 DK885_RS09360 WP_000187523.1 1846539..1846985(-) (radC) [Escherichia coli strain C600]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=262449 DK885_RS09360 WP_000187523.1 1846539..1846985(-) (radC) [Escherichia coli strain C600]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419

Multiple sequence alignment