Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   Y89_RS09680 Genome accession   NZ_CP030913
Coordinates   2024682..2025005 (+) Length   107 a.a.
NCBI ID   WP_012075039.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y89     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019682..2030005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y89_RS09665 (Y89_1876) - 2020481..2021438 (+) 958 Protein_1891 UDP-glucose 4-epimerase family protein -
  Y89_RS09670 (Y89_1877) - 2021440..2022459 (+) 1020 WP_003150897.1 glycosyltransferase family 4 protein -
  Y89_RS09675 (Y89_1878) - 2022494..2024491 (+) 1998 WP_025297832.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  Y89_RS09680 (Y89_1879) comEA/comE1 2024682..2025005 (+) 324 WP_012075039.1 ComEA family DNA-binding protein Machinery gene
  Y89_RS09690 (Y89_1880) - 2025223..2026419 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  Y89_RS09695 (Y89_1881) uvrB 2026606..2028618 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11265.23 Da        Isoelectric Point: 7.1662

>NTDB_id=261577 Y89_RS09680 WP_012075039.1 2024682..2025005(+) (comEA/comE1) [Pseudomonas aeruginosa strain Y89]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATMPTEASTAEVVNINTADEATLVRGLKGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=261577 Y89_RS09680 WP_012075039.1 2024682..2025005(+) (comEA/comE1) [Pseudomonas aeruginosa strain Y89]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAATGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAAGGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio cholerae C6706

40.385

97.196

0.393
  comEA Vibrio cholerae strain A1552

40.385

97.196

0.393
  comE1/comEA Haemophilus influenzae Rd KW20

40.777

96.262

0.393
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Acinetobacter baumannii strain A118

30.303

100

0.374
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374