Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   Ysp71_RS09675 Genome accession   NZ_CP030911
Coordinates   2024029..2024352 (+) Length   107 a.a.
NCBI ID   WP_012075039.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y71     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019029..2029352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ysp71_RS09660 (Ysp71_1877) - 2019829..2020785 (+) 957 WP_012075037.1 SDR family oxidoreductase -
  Ysp71_RS09665 (Ysp71_1878) - 2020787..2021806 (+) 1020 WP_003150897.1 glycosyltransferase family 4 protein -
  Ysp71_RS09670 (Ysp71_1879) - 2021841..2023838 (+) 1998 WP_025297832.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  Ysp71_RS09675 (Ysp71_1880) comEA/comE1 2024029..2024352 (+) 324 WP_012075039.1 ComEA family DNA-binding protein Machinery gene
  Ysp71_RS09685 (Ysp71_1881) - 2024570..2025766 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  Ysp71_RS09690 (Ysp71_1882) uvrB 2025953..2027965 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11265.23 Da        Isoelectric Point: 7.1662

>NTDB_id=261369 Ysp71_RS09675 WP_012075039.1 2024029..2024352(+) (comEA/comE1) [Pseudomonas aeruginosa strain Y71]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATMPTEASTAEVVNINTADEATLVRGLKGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=261369 Ysp71_RS09675 WP_012075039.1 2024029..2024352(+) (comEA/comE1) [Pseudomonas aeruginosa strain Y71]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAATGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAAGGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio cholerae C6706

40.385

97.196

0.393
  comEA Vibrio cholerae strain A1552

40.385

97.196

0.393
  comE1/comEA Haemophilus influenzae Rd KW20

40.777

96.262

0.393
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Acinetobacter baumannii strain A118

30.303

100

0.374
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374