Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPSF3K_RS03060 Genome accession   NZ_CP025420
Coordinates   629268..631247 (+) Length   659 a.a.
NCBI ID   WP_003108554.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 624268..636247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS03045 (SPSF3K_00627) - 625083..626276 (-) 1194 WP_051018443.1 D-alanyl-D-alanine carboxypeptidase family protein -
  SPSF3K_RS03050 (SPSF3K_00628) pbp3 626354..627574 (-) 1221 WP_003108558.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPSF3K_RS03055 (SPSF3K_00629) pbp3 627698..628936 (-) 1239 WP_003108557.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPSF3K_RS03060 (SPSF3K_00630) amiA3 629268..631247 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  SPSF3K_RS03065 (SPSF3K_00631) amiC 631315..632814 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  SPSF3K_RS03070 (SPSF3K_00632) amiD 632814..633740 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPSF3K_RS03075 (SPSF3K_00633) amiE 633749..634819 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS03080 (SPSF3K_00634) amiF 634812..635756 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73308.54 Da        Isoelectric Point: 5.2041

>NTDB_id=261160 SPSF3K_RS03060 WP_003108554.1 629268..631247(+) (amiA3) [Streptococcus parauberis strain SPOF3K]
MKNGKWLAAAGIAVLSVSALTACGNGSSKDSKSKTYSYVYTTDPDTLDYLVSGRSTTSEITQNGVDGLMEYDNEGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYAKVTGEDFVTGMKHAADSNSDALYLVQDSIKGLSDYIDGKTKDFSTVG
VKAVDKNTVQYTLKQPESFWNSKLTYGILSPVNADFLKSQGKDFGKASDASSILYNGPFLISALTSKSSIEFTKNENYWD
KEDVHLDAVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYKTAKKKYGENITYAPQKSNIYYATFNLNRTAYDHTKK
TDDKQKEDTRKAVLNKDFRQALTFGFNRKSYTAQSAGEEAASKSLRNMLIPPAFVQIKGEDFGKTVEKDLATYGDQWKDV
SLADAQDGLYNKDKAKAQMDKAKEALEAEGVQFPIHIDMPQDQTATVNMQQAQSMKQSMEDSLGKENVVIDIIELNADTY
NNVTYMAETPTQQDWDISTASGWSPDYLDPSSYLDIFNPSLANAQTKFIGLEPIKDNTIASEAGLDEFSKLANEASKITD
DKDARYEKYAKAQAALADSAVYIPTYSLGGTPAVTKVVPFSAAFGWAGNKSDNTYFKYVQLQDKPVTAKQFNKAMKDWKK
SKEKSNKKYEESLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=261160 SPSF3K_RS03060 WP_003108554.1 629268..631247(+) (amiA3) [Streptococcus parauberis strain SPOF3K]
ATGAAAAATGGGAAATGGTTAGCGGCAGCGGGGATTGCTGTTTTGTCAGTTTCAGCTTTGACTGCCTGTGGTAATGGTTC
AAGTAAAGATAGCAAAAGTAAAACCTATAGCTATGTTTATACAACTGATCCTGATACCTTGGATTACTTAGTTTCAGGGC
GTTCAACAACCAGTGAAATCACCCAAAATGGTGTTGATGGCTTGATGGAATATGACAACGAAGGGAATTTGGTTCCTTCT
GTAGCTAAAAGCTGGACAGTATCAAAAGACGGTTTAACTTATACCTATAAAATACGTAAAGATTCAAAATGGTATACAGC
TGATGGTGAAGAATACGCTAAGGTAACAGGGGAAGACTTTGTGACTGGCATGAAACATGCTGCAGATAGCAATTCTGATG
CCCTTTACCTAGTTCAAGATTCAATTAAAGGTTTAAGTGATTATATCGATGGGAAAACAAAAGATTTCTCAACTGTTGGT
GTTAAAGCCGTTGACAAAAACACAGTTCAATATACATTGAAACAACCAGAAAGTTTCTGGAATTCTAAATTAACTTATGG
TATCTTATCTCCAGTTAATGCAGATTTTCTAAAATCACAAGGTAAAGATTTTGGTAAAGCATCTGATGCTTCATCGATTC
TTTATAACGGGCCATTCCTTATCTCCGCATTAACAAGTAAATCATCAATTGAATTTACAAAAAATGAAAACTATTGGGAT
AAAGAAGATGTTCACTTAGATGCTGTTCAATTAACTTACTATGATGGACAAGATCAAGAGTCTCTATTTAGAAACTTTGA
TAAAGGTGCTTATTCGGCTGCACGTTTATTCCCAACAACTCCATCTTACAAGACAGCTAAGAAAAAATATGGCGAAAACA
TCACTTATGCACCTCAAAAATCAAATATTTATTATGCAACATTTAATTTAAACCGTACGGCTTATGACCATACTAAAAAG
ACAGACGATAAACAAAAAGAGGATACTCGTAAAGCAGTTCTAAATAAAGATTTCCGTCAAGCTTTAACATTTGGTTTTAA
CCGTAAATCCTATACAGCTCAATCAGCTGGTGAAGAAGCAGCAAGCAAATCACTTCGTAATATGCTAATTCCACCAGCAT
TTGTTCAAATTAAGGGTGAAGACTTTGGCAAGACTGTTGAAAAAGATTTAGCGACATATGGAGATCAATGGAAAGATGTT
AGCCTAGCTGATGCCCAAGATGGTCTTTACAATAAAGACAAAGCTAAGGCTCAAATGGATAAAGCTAAAGAAGCCTTGGA
AGCTGAAGGTGTTCAATTCCCAATTCACATTGATATGCCTCAAGATCAGACTGCTACCGTAAATATGCAACAAGCCCAAT
CCATGAAGCAATCAATGGAAGACTCACTTGGTAAAGAAAATGTTGTAATTGACATTATTGAGCTCAATGCTGATACCTAT
AACAATGTTACTTATATGGCAGAAACACCAACTCAACAAGATTGGGATATTTCTACAGCTTCTGGATGGAGTCCTGACTA
CTTAGACCCAAGCTCATATCTTGATATCTTTAATCCAAGCTTGGCTAATGCACAAACTAAATTTATTGGACTTGAACCAA
TTAAAGATAATACTATAGCATCTGAAGCTGGTTTAGATGAATTTAGTAAATTAGCAAATGAAGCAAGTAAGATTACTGAT
GACAAGGATGCTCGTTATGAAAAATATGCAAAAGCGCAAGCTGCTCTTGCGGATTCAGCAGTCTACATTCCAACATACTC
ACTTGGAGGAACGCCTGCAGTAACAAAAGTTGTTCCATTCTCAGCTGCATTTGGTTGGGCAGGTAACAAATCAGATAATA
CATATTTCAAATATGTACAATTACAAGATAAACCTGTAACGGCTAAACAATTCAACAAAGCAATGAAGGATTGGAAAAAG
TCAAAAGAAAAATCAAATAAAAAATATGAAGAGTCATTAGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.576

100

0.527
  amiA Streptococcus salivarius strain HSISS4

52.352

100

0.524
  amiA3 Streptococcus thermophilus LMD-9

52.121

100

0.522

Multiple sequence alignment