Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SPSF3K_RS03065 Genome accession   NZ_CP025420
Coordinates   631315..632814 (+) Length   499 a.a.
NCBI ID   WP_003108552.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 626315..637814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS03050 (SPSF3K_00628) pbp3 626354..627574 (-) 1221 WP_003108558.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPSF3K_RS03055 (SPSF3K_00629) pbp3 627698..628936 (-) 1239 WP_003108557.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPSF3K_RS03060 (SPSF3K_00630) amiA3 629268..631247 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  SPSF3K_RS03065 (SPSF3K_00631) amiC 631315..632814 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  SPSF3K_RS03070 (SPSF3K_00632) amiD 632814..633740 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPSF3K_RS03075 (SPSF3K_00633) amiE 633749..634819 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS03080 (SPSF3K_00634) amiF 634812..635756 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55819.28 Da        Isoelectric Point: 10.0775

>NTDB_id=261161 SPSF3K_RS03065 WP_003108552.1 631315..632814(+) (amiC) [Streptococcus parauberis strain SPOF3K]
MKKYIFERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKDNYRNTIFERMGYVNYYNSKELQSKAE
KMDKAVTIEPTAKNKAVYKKFIKQQGKGWTLKEFEESKEFYAVRDIPIYERVWNFFSHILVIDHPWTIQDPKNPNLERYI
RPEMDPAVGPALVGSGTKHKYLLFFDGNFPFIHQNFVSFDLGTSYPTYANIPVIQVITQGQGRSLSEQTKFPSGVTKFSP
IDITSRTYKSPKDADARDRANFGPKDPYTATKNKHAEPSMIANSFKIGIIGVALSYIIGLPIGMLMAYYKDGIFDRFSTA
ATTFMLALPSIALIYIVRFLGSKIGLPDTFPLLGASDPRSYVLPALILGILGTPGTVVWFRRYIVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDAIKAANNSMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=261161 SPSF3K_RS03065 WP_003108552.1 631315..632814(+) (amiC) [Streptococcus parauberis strain SPOF3K]
ATGAAAAAGTATATATTCGAGCGCATTTTGAGGTCTTTGATTTCAATTTTGTTGGTAACGACATTAACTTATGTCATTGT
TTTTACATTGGTACCAACAAACTTGATTTTTAAACAGGACCCCAACTATAATAAGATGGTGACTACACCAGATAAGAAAG
ATAACTACCGTAATACCATTTTTGAACGCATGGGTTATGTTAATTACTATAATAGTAAAGAACTTCAAAGCAAAGCTGAA
AAAATGGATAAGGCCGTAACGATTGAACCAACTGCTAAAAATAAAGCGGTCTACAAAAAATTCATCAAGCAACAAGGTAA
AGGTTGGACGCTGAAAGAATTCGAAGAAAGCAAAGAATTTTATGCGGTTAGAGATATTCCAATCTATGAACGTGTTTGGA
ACTTCTTTAGTCATATCCTTGTTATTGATCATCCTTGGACGATACAAGATCCAAAGAATCCTAATTTGGAACGCTATATT
AGACCCGAAATGGATCCAGCAGTCGGACCTGCCTTAGTTGGTTCTGGAACTAAGCATAAATACTTGCTCTTCTTTGATGG
GAATTTCCCATTCATTCACCAAAACTTTGTTTCCTTTGACTTAGGAACTTCTTATCCAACCTATGCTAATATTCCTGTAA
TTCAGGTTATCACACAAGGACAAGGTAGAAGTCTATCAGAACAAACTAAATTCCCGTCTGGAGTTACTAAGTTTTCACCA
ATTGATATCACAAGTAGAACTTATAAATCACCTAAAGATGCAGATGCTCGTGACCGAGCTAATTTCGGCCCGAAAGATCC
TTATACAGCAACTAAGAATAAACATGCTGAGCCATCAATGATTGCAAATTCATTTAAAATTGGAATCATTGGTGTTGCCT
TGTCATATATTATTGGGCTACCTATTGGTATGCTTATGGCCTATTATAAAGATGGAATTTTTGATCGATTTTCTACAGCA
GCTACAACATTTATGTTGGCTTTGCCAAGTATTGCCTTGATTTATATTGTTCGCTTCTTGGGTTCGAAAATTGGTTTACC
AGATACTTTTCCATTGTTAGGAGCCAGTGATCCAAGATCTTATGTATTGCCTGCATTAATTTTAGGTATTTTAGGAACGC
CTGGAACCGTTGTATGGTTCCGTCGTTATATCGTTGACTTACAAGGAAGCGATTTTGTTCGATTTGCGCGTGCAAAAGGA
TTAACAGAAGCTGAAATTTCAAAAAATCACCTATTTAAGCAAGCGATGGTACCAATTGTTAATGGTATTCCCCAAGCAAT
TGTTGCAACTATCGCAGGTGCGACACTGACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTAATTGATGCTA
TTAAAGCAGCAAATAACTCAATGGTCGTTGGACTAGTCTTTATCTTTGCAGTCTTATCAATTCTTGCTTTATTAGCAGGG
GACATTTTAATGACTATCTTAGATCCACGTATTAAATTATCAAGTAAAGGAGGGAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

61.323

100

0.613
  amiC Streptococcus thermophilus LMG 18311

61.122

100

0.611
  amiC Streptococcus salivarius strain HSISS4

60.922

100

0.609

Multiple sequence alignment