Detailed information NTG0261164

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SPSF3K_RS03080
• Genome accession: NZ_CP025420
• Coordinates: 634812..635756 (+)
• Length: 314 a.a.
• NCBI ID: WP_003108548.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain SPOF3K
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 629812..640756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSF3K_RS03065 (SPSF3K_00631)	amiC	631315..632814 (+)	1500	WP_003108552.1	ABC transporter permease	Regulator
SPSF3K_RS03070 (SPSF3K_00632)	amiD	632814..633740 (+)	927	WP_003104826.1	oligopeptide ABC transporter permease OppC	Regulator
SPSF3K_RS03075 (SPSF3K_00633)	amiE	633749..634819 (+)	1071	WP_003107438.1	ABC transporter ATP-binding protein	Regulator
SPSF3K_RS03080 (SPSF3K_00634)	amiF	634812..635756 (+)	945	WP_003108548.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 35731.04 Da
• Isoelectric Point: 6.9313

>NTDB_id=261164 SPSF3K_RS03080 WP_003108548.1 634812..635756(+) (amiF) [Streptococcus parauberis strain SPOF3K]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIIYDGKQINKKKSNS
EREELIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKSEEDRKDKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERQKKLLVYNVDQHDYTVDKPEMVEIQPGHFVWANKLETEKYKKEIADRQQSN

Nucleotide

• Length: 945 bp

>NTDB_id=261164 SPSF3K_RS03080 WP_003108548.1 634812..635756(+) (amiF) [Streptococcus parauberis strain SPOF3K]
ATGTCTGAGAAGCTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCCAATTTCTTTATTAATCGAGGGGAAACTTTTTCTTTGGTTGGTGAGTCAGGAAGTGGGAAAACAACAATTGGGCGTG
CTATCATTGGTTTAAATGATACGAGTTCAGGTGAAATCATTTATGATGGTAAACAAATCAATAAGAAAAAAAGTAATTCA
GAACGTGAAGAATTAATTAAAAAGATTCAAATGATCTTTCAAGATCCAGCAGCAAGTTTGAATGAACGTGCAACTGTTGA
CTATATTATTTCTGAAGGACTATACAATCATAAACTGTTCAAAAGTGAAGAAGACCGTAAAGATAAAATCAAAAACATGA
TGACAGAAGTTGGACTTTTGTCTGAACATTTAACACGTTATCCTCATGAATTTTCAGGTGGACAACGTCAGCGTATCGGG
ATTGCGCGTGCTTTAGTTATGGATCCAGAATTTATTATTGCTGATGAGCCTATCTCGGCTCTAGACGTTTCGGTTCGAGC
TCAAGTGCTAAATCTTCTAAAACGGATGCAAAGAGAAAAAGGTTTAACTTATCTCTTTATTGCCCATGATTTATCAGTAG
TTCGGTTCATATCTGATCGAATCGCAGTTATTCATAAAGGTGTTATTGTAGAAGTAGCTGAAACTGAAGAATTATTTATC
AATCCAGTTCATCCATATACTAAATCTCTATTATCCGCTGTACCGATTCCGGATCCAATTTTGGAAAGACAGAAAAAACT
TCTTGTCTATAACGTTGATCAGCATGACTATACAGTTGACAAACCAGAAATGGTAGAAATCCAACCAGGTCACTTCGTTT
GGGCGAATAAATTAGAAACAGAGAAATATAAAAAGGAAATTGCTGATAGACAGCAGTCCAACTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	81.373	97.452	0.793
amiF	Streptococcus salivarius strain HSISS4	81.373	97.452	0.793
amiF	Streptococcus thermophilus LMD-9	81.046	97.452	0.79