Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SPSF3K_RS03075 Genome accession   NZ_CP025420
Coordinates   633749..634819 (+) Length   356 a.a.
NCBI ID   WP_003107438.1    Uniprot ID   A0A0E2USW8
Organism   Streptococcus parauberis strain SPOF3K     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 628749..639819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS03060 (SPSF3K_00630) amiA3 629268..631247 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  SPSF3K_RS03065 (SPSF3K_00631) amiC 631315..632814 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  SPSF3K_RS03070 (SPSF3K_00632) amiD 632814..633740 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPSF3K_RS03075 (SPSF3K_00633) amiE 633749..634819 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS03080 (SPSF3K_00634) amiF 634812..635756 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39831.78 Da        Isoelectric Point: 5.6754

>NTDB_id=261163 SPSF3K_RS03075 WP_003107438.1 633749..634819(+) (amiE) [Streptococcus parauberis strain SPOF3K]
MTENKEVILSAKNVVVEFDVRDRVLTAIRDISIDLHEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGKQITEVIVKHQKKPRSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYEFTIIFITHDLGVVASIATNVAVMYAGEVVE
YGTVEDVFYDPRHPYTWSLLSSLPQLADDKGILFSIPGTPPSLYKPIIGDAFAPRSQYAMKIDFEEAVPKFDISDSHWAK
TWLLHPEAPKVQKPVVIQNLHEKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=261163 SPSF3K_RS03075 WP_003107438.1 633749..634819(+) (amiE) [Streptococcus parauberis strain SPOF3K]
ATGACTGAAAATAAAGAAGTAATTTTAAGTGCAAAGAATGTTGTTGTAGAATTTGACGTACGTGACCGTGTTTTGACTGC
CATCCGTGATATCTCTATCGATTTACATGAAGGAGAAGTCCTTGCGGTTGTTGGCGAGTCAGGTAGTGGTAAGTCAGTAC
TAACAAAAACATTTACCGGAATGTTAGAATCTAATGGTCGCGTTGCCTCAGGGTCGATTGATTACCGCGGACAAGAACTA
ACAAAACTAAAAAATCATAAAGATTGGGAAGGAATACGTGGTGCAAAAATTGCGACCATCTTCCAAGACCCGATGACCAG
TTTAGACCCAATTCAAACCATTGGGAAACAAATTACGGAAGTAATAGTTAAACATCAGAAAAAACCTAGATCAGAAGCTA
AAAAACTTGCGATTGATTATATGAATAAAGTTGGTATTCCAGAAGCTGAAAAACGTTTTGATGAATATCCTTTCCAATAC
TCTGGTGGGATGAGACAACGTATCGTTATTGCCATTGCTCTTGCATGTCGTCCAGATATCCTTATCTGTGATGAGCCAAC
AACAGCTTTAGACGTTACTATCCAAGCTCAAATTATTGACTTATTAAAAACACTTCAAAAAGAATACGAATTTACAATTA
TCTTCATCACTCATGATTTGGGCGTTGTTGCAAGTATTGCAACCAACGTTGCAGTAATGTATGCTGGCGAAGTTGTTGAG
TATGGAACGGTTGAGGATGTTTTCTATGATCCTCGTCATCCATATACATGGAGTTTATTATCAAGTCTACCTCAATTAGC
AGATGACAAGGGGATTCTCTTTTCAATTCCCGGAACGCCTCCATCTTTATACAAACCAATTATTGGCGACGCCTTTGCTC
CAAGATCTCAGTATGCTATGAAGATTGATTTTGAAGAAGCTGTTCCAAAATTTGATATTAGCGACAGCCATTGGGCTAAA
ACATGGTTACTCCATCCGGAGGCACCAAAAGTTCAAAAACCAGTAGTTATACAAAATTTACATGAGAAAATCTCAAGTAA
GCAAATTTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2USW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80.278

100

0.812
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.522

96.91

0.548

Multiple sequence alignment