Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPSF3K_RS03070 Genome accession   NZ_CP025420
Coordinates   632814..633740 (+) Length   308 a.a.
NCBI ID   WP_003104826.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 627814..638740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS03060 (SPSF3K_00630) amiA3 629268..631247 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  SPSF3K_RS03065 (SPSF3K_00631) amiC 631315..632814 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  SPSF3K_RS03070 (SPSF3K_00632) amiD 632814..633740 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPSF3K_RS03075 (SPSF3K_00633) amiE 633749..634819 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS03080 (SPSF3K_00634) amiF 634812..635756 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34431.17 Da        Isoelectric Point: 6.9724

>NTDB_id=261162 SPSF3K_RS03070 WP_003104826.1 632814..633740(+) (amiD) [Streptococcus parauberis strain SPOF3K]
MASIDKSKFEFVELDSYASEVIDAPSYSYWKSVFRQFFSRKSTIVMLVILIAIILMSFVYPMFANYDFGDVSNINDFSKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATAINMIVGVVVGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTYKIVSKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSYLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=261162 SPSF3K_RS03070 WP_003104826.1 632814..633740(+) (amiD) [Streptococcus parauberis strain SPOF3K]
ATGGCATCTATAGATAAAAGCAAGTTCGAATTTGTCGAACTAGATAGTTATGCATCAGAAGTCATTGATGCCCCTTCCTA
TTCATACTGGAAATCAGTATTTAGACAATTCTTTTCACGTAAATCTACTATTGTAATGTTAGTTATTTTAATTGCAATCA
TCCTAATGAGTTTTGTATATCCGATGTTTGCTAACTATGACTTTGGTGATGTGTCAAACATTAATGATTTCTCTAAACGC
TATATCTCTCCAAATGGGGAATATTGGTTTGGTACAGACAAAAATGGTCAGTCACTCTTTGATGGTGTTTGGTATGGTGC
TAGAAACTCGATCCTAATTTCCGTTATTGCTACAGCAATCAATATGATTGTTGGGGTAGTTGTTGGTGGCCTTTGGGGAG
TTTCAAAAGCAGTTGATAAGGTAATGATTGAAGTCTACAATGTTATTTCTAACTTACCTCAAATGCTTATCATTATTGTC
TTAACTTATTCAATTGGTGCTGGTTTCTGGAACCTTATCTTTGCCTTCTGTGTAACTGGATGGATAGGGATTGCTTATGC
TGTCCGTGTCCAAGTACTCCGTTACCGTGATTTAGAGTATAACTTAGCCAGTCAAACACTAGGAACACCAACTTACAAAA
TTGTATCCAAAAATTTATTACCACAGTTAGTTTCTGTTATTGTATCAATGGTTTCTCTTTTGTTACCAGCCTACATTTCA
TCAGAAGCCTTCTTATCATTTTTTGGTTTAGGATTACCATTGTCAGAACCAAGTTTAGGCCGTTTGATTTCAAATTATTC
ATCATATTTGACAACAAACGCTTACCTATTCTGGATTCCATTAACTACTCTTATTCTAGTATCTCTTCCACTTTATATAG
TTGGACAAAACTTAGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment