Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CWE28_RS13890 Genome accession   NZ_CP030861
Coordinates   2846784..2848277 (-) Length   497 a.a.
NCBI ID   WP_023114980.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HS9     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2841784..2853277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWE28_RS13875 (CWE28_13870) - 2842514..2843431 (+) 918 WP_003161164.1 LysR substrate-binding domain-containing protein -
  CWE28_RS13880 (CWE28_13875) pchP 2843582..2844631 (+) 1050 WP_023088685.1 phosphorylcholine phosphatase -
  CWE28_RS13885 (CWE28_13880) betT 2844674..2846659 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  CWE28_RS13890 (CWE28_13885) comM 2846784..2848277 (-) 1494 WP_023114980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CWE28_RS13895 (CWE28_13890) - 2848318..2848578 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  CWE28_RS13900 (CWE28_13895) glnK 2849018..2849356 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  CWE28_RS13905 (CWE28_13900) - 2849396..2850724 (+) 1329 WP_003109815.1 ammonium transporter -
  CWE28_RS13910 (CWE28_13905) - 2850985..2851410 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CWE28_RS13915 (CWE28_13910) sutA 2851488..2851805 (+) 318 WP_003098240.1 transcriptional regulator SutA -
  CWE28_RS13925 (CWE28_13920) - 2852220..2853134 (+) 915 WP_003163071.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53171.14 Da        Isoelectric Point: 7.7575

>NTDB_id=261089 CWE28_RS13890 WP_023114980.1 2846784..2848277(-) (comM) [Pseudomonas aeruginosa strain HS9]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=261089 CWE28_RS13890 WP_023114980.1 2846784..2848277(-) (comM) [Pseudomonas aeruginosa strain HS9]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGACCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.446

100

0.563
  comM Vibrio campbellii strain DS40M4

56.338

100

0.563
  comM Vibrio cholerae O1 biovar El Tor strain E7946

55.936

100

0.559
  comM Vibrio cholerae strain A1552

55.936

100

0.559
  comM Glaesserella parasuis strain SC1401

54.781

100

0.553
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.471
  comM Helicobacter pylori 26695

39.044

100

0.394

Multiple sequence alignment