Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SmaCSM2_RS16940 Genome accession   NZ_CP025298
Coordinates   3683840..3685099 (+) Length   419 a.a.
NCBI ID   WP_049442651.1    Uniprot ID   A0AAD0BX32
Organism   Stenotrophomonas maltophilia strain CSM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3683840..3696765 3683840..3685099 within 0


Gene organization within MGE regions


Location: 3683840..3696765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SmaCSM2_RS16940 (SmaCSM2_16940) pilC 3683840..3685099 (+) 1260 WP_049442651.1 type II secretion system F family protein Machinery gene
  SmaCSM2_RS16945 (SmaCSM2_16945) - 3685108..3685971 (+) 864 WP_005418626.1 A24 family peptidase -
  SmaCSM2_RS16950 (SmaCSM2_16950) coaE 3685983..3686594 (+) 612 WP_101765984.1 dephospho-CoA kinase -
  SmaCSM2_RS16955 (SmaCSM2_16955) - 3686655..3687041 (-) 387 WP_101765985.1 hypothetical protein -
  SmaCSM2_RS16960 (SmaCSM2_16960) - 3687526..3688896 (-) 1371 WP_075676409.1 HAMP domain-containing sensor histidine kinase -
  SmaCSM2_RS16965 (SmaCSM2_16965) - 3688859..3689536 (-) 678 WP_005410804.1 response regulator transcription factor -
  SmaCSM2_RS16970 (SmaCSM2_16970) - 3689700..3690161 (-) 462 WP_049442760.1 hypothetical protein -
  SmaCSM2_RS16975 (SmaCSM2_16975) - 3690277..3690747 (-) 471 WP_049442672.1 hypothetical protein -
  SmaCSM2_RS16980 (SmaCSM2_16980) - 3690843..3691322 (-) 480 WP_049442673.1 hypothetical protein -
  SmaCSM2_RS16985 (SmaCSM2_16985) rimK 3691581..3692459 (-) 879 WP_005418651.1 30S ribosomal protein S6--L-glutamate ligase -
  SmaCSM2_RS16990 (SmaCSM2_16990) - 3692721..3693161 (-) 441 WP_158298007.1 calcium-binding protein -
  SmaCSM2_RS22190 (SmaCSM2_16995) - 3693217..3696765 (-) 3549 WP_101765987.1 calcium-binding protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45735.09 Da        Isoelectric Point: 10.1703

>NTDB_id=259895 SmaCSM2_RS16940 WP_049442651.1 3683840..3685099(+) (pilC) [Stenotrophomonas maltophilia strain CSM2]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGISPGQVKPKPKPLFGAAGSAVKPKD
IAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDTIRTDIEGGSSLYEAVSRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTIATYKENIESLKGKIKKALFYPVMVMAVAMAVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWL
ILLALVGTIVGFTAAYKRSPNMRHTLDKLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
SVLRMRDDVSVGYPVNMAMKQTSLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVSNAVDALSSLLEPMIMVFIGTIV
GGIVVGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=259895 SmaCSM2_RS16940 WP_049442651.1 3683840..3685099(+) (pilC) [Stenotrophomonas maltophilia strain CSM2]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAACCCGTGGCGCGTAGCACCATGGAATTGCAGCCGTTTGTCTGGGAGGG
GACGGACAAGCGCGGCGTGAAGATGAAGGGCGAGCAGATGGCCAAGAATGCCAATCTGCTGCGAGCTGAGTTGCGCCGTC
AGGGCATCAGCCCTGGGCAAGTCAAACCCAAGCCGAAGCCCTTGTTTGGTGCTGCCGGCAGTGCCGTGAAGCCCAAGGAC
ATCGCCTTCTTCAGTCGGCAGATGGCCACCATGATGAAGTCAGGCGTCCCGATTGTAGGAGCTCTGGATATCATCGCGAG
TGGGCATAAGAACCCGCGCATGAAGAAGATGGTGGATACGATCCGCACCGATATTGAAGGTGGTTCTTCTCTGTACGAAG
CCGTCAGCAGGCATCCGGTCCAGTTCGACGATCTGTATCGAAATCTGGTTCGTGCTGGCGAAGGCGCTGGCGTGTTGGAA
ACCGTTCTTGACACCATCGCAACATATAAAGAGAACATCGAGTCGCTCAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGTGATGGTTATGGCAGTGGCAATGGCCGTCAGCGGAATTCTGCTCGTATGGGTCGTGCCTCAGTTCGAGGACGTATTTA
AGGGCTTTGGTGCCGAGTTGCCTGCCTTCACCCAGATGATCGTCAACCTGTCCCGCTTCATGGTGTCTTGGTGGTGGCTC
ATACTGCTTGCCCTTGTCGGCACCATCGTGGGGTTCACCGCGGCCTATAAGCGCTCTCCCAACATGCGTCACACGTTGGA
CAAGTTGATCCTGAAAGTGCCGGTGATCGGCCAGATCATGCATAACAGCGCCATCGCACGCTTTGCCCGCACCACGGCTG
TGACCTTCAAGGCCGGTGTCCCACTGGTTGAAGCTCTAGGCATCGTCGCAGGTGCAACAGGCAACAAGCTCTACGAAGAG
TCCGTGCTTCGTATGCGTGACGACGTTTCGGTGGGCTACCCGGTCAACATGGCCATGAAACAAACCAGTCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAGGCGGGCGCCCTGGACGCCATGCTGTTCAAGGTGGCGGAGTATTATG
AACAGGAAGTCAGCAATGCGGTCGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTATTCATTGGCACCATCGTC
GGCGGTATTGTTGTCGGCATGTACCTGCCCATCTTCAAACTTGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.478

96.897

0.499
  pilC Legionella pneumophila strain ERS1305867

52.381

95.227

0.499
  pilC Acinetobacter baylyi ADP1

49.261

96.897

0.477
  pilC Acinetobacter baumannii D1279779

49.874

94.749

0.473
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387

Multiple sequence alignment