Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DP112_RS03490 Genome accession   NZ_CP030125
Coordinates   681586..682248 (+) Length   220 a.a.
NCBI ID   WP_114866355.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676586..687248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS03470 (DP112_03470) - 677036..677965 (-) 930 WP_105183703.1 ABC transporter substrate-binding protein -
  DP112_RS03475 (DP112_03475) - 677978..678763 (-) 786 WP_024382740.1 ABC transporter ATP-binding protein -
  DP112_RS03480 (DP112_03480) - 678915..680360 (-) 1446 WP_114866353.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  DP112_RS03485 (DP112_03485) - 680772..681518 (+) 747 WP_114866354.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DP112_RS03490 (DP112_03490) comEA/celA/cilE 681586..682248 (+) 663 WP_114866355.1 helix-hairpin-helix domain-containing protein Machinery gene
  DP112_RS03495 (DP112_03495) comEC/celB 682232..684469 (+) 2238 WP_114866356.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23375.08 Da        Isoelectric Point: 4.0690

>NTDB_id=258938 DP112_RS03490 WP_114866355.1 681586..682248(+) (comEA/celA/cilE) [Streptococcus suis strain HA1003]
MDTIKTYIEMLKEYKWQIALPAVAGLLLTTFLIFSQPAKSDQTGLTDFPQLEQTSSSSELVEETSTEVSEEPSQLVVDVK
GAVAKPGLYTLAADARINDAVDAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=258938 DP112_RS03490 WP_114866355.1 681586..682248(+) (comEA/celA/cilE) [Streptococcus suis strain HA1003]
ATGGATACGATTAAAACTTATATTGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTGCCAGCAGTTGCAGGTTTGCT
TCTGACGACATTCTTAATATTCAGTCAACCAGCCAAGTCAGATCAAACAGGACTGACAGATTTTCCACAGCTAGAGCAAA
CTTCTAGCAGCTCTGAGTTGGTCGAGGAAACCAGTACAGAAGTAAGTGAGGAGCCCAGCCAGCTAGTCGTTGATGTCAAA
GGAGCGGTAGCAAAGCCAGGACTCTACACTTTAGCAGCTGATGCGCGTATCAATGATGCGGTGGATGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCCATGTCCCAAGAAGAAAAAAACACCAGTCTGGTTAAT
CTGAATACGGCGACCGAGGCGGACCTGCAGACCATTTCGGGCATCGGTGCCAAGCGAGCGACAGACATTATCGCTTATCG
TGAGGCAAACGGTGGCTTCAAGTCGGTGGACGACCTCAACAATGTATCGGGCATAGGCGACAAGACCATGGAAAGCATCC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae D39

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae R6

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.248

99.091

0.468
  comEA/celA/cilE Streptococcus mitis SK321

45.495

100

0.459
  comEA Streptococcus thermophilus LMD-9

58.025

73.636

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

39.631

98.636

0.391