Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | CU648_RS00270 | Genome accession | NZ_CP025122 |
| Coordinates | 41564..42145 (-) | Length | 193 a.a. |
| NCBI ID | WP_101194484.1 | Uniprot ID | - |
| Organism | Bacillus sp. HBCD-sjtu | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 36564..47145
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU648_RS00240 (CU648_00240) | - | 36602..37426 (-) | 825 | WP_101194483.1 | PP2C family serine/threonine-protein phosphatase | - |
| CU648_RS00245 (CU648_00245) | - | 37410..37895 (-) | 486 | WP_017561555.1 | HIT family protein | - |
| CU648_RS00250 (CU648_00250) | - | 37998..38171 (-) | 174 | WP_073524232.1 | septum formation initiator | - |
| CU648_RS00255 (CU648_00255) | - | 38455..39291 (-) | 837 | WP_017561553.1 | proline/glycine betaine ABC transporter permease | - |
| CU648_RS00260 (CU648_00260) | - | 39284..40489 (-) | 1206 | WP_000370609.1 | glycine betaine/L-proline ABC transporter ATP-binding protein | - |
| CU648_RS00265 (CU648_00265) | - | 40661..41518 (+) | 858 | WP_001227634.1 | glycine betaine ABC transporter substrate-binding protein | - |
| CU648_RS00270 (CU648_00270) | clpP | 41564..42145 (-) | 582 | WP_101194484.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
| CU648_RS00275 (CU648_00275) | - | 42167..42853 (-) | 687 | WP_101194485.1 | RNA polymerase subunit sigma-70 | - |
| CU648_RS00280 (CU648_00280) | - | 42997..43317 (+) | 321 | WP_101194486.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| CU648_RS00285 (CU648_00285) | rpiA | 43322..43984 (+) | 663 | WP_042511163.1 | ribose 5-phosphate isomerase A | - |
| CU648_RS00290 (CU648_00290) | - | 44092..44526 (+) | 435 | WP_046947318.1 | GNAT family N-acetyltransferase | - |
| CU648_RS00295 (CU648_00295) | - | 44657..46024 (-) | 1368 | WP_101194487.1 | lytic polysaccharide monooxygenase | - |
| CU648_RS00300 (CU648_00300) | - | 46462..46980 (-) | 519 | WP_000720566.1 | DNA topology modulation protein | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21147.45 Da Isoelectric Point: 5.7430
>NTDB_id=258475 CU648_RS00270 WP_101194484.1 41564..42145(-) (clpP) [Bacillus sp. HBCD-sjtu]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAKKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVAKK
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAKKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVAKK
Nucleotide
Download Length: 582 bp
>NTDB_id=258475 CU648_RS00270 WP_101194484.1 41564..42145(-) (clpP) [Bacillus sp. HBCD-sjtu]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGCTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAAAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTGCGAAAAAATAG
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGCTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAAAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTGCGAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
67.368 |
98.446 |
0.663 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
67.196 |
97.927 |
0.658 |
| clpP | Streptococcus pneumoniae R6 |
54.688 |
99.482 |
0.544 |
| clpP | Streptococcus pneumoniae Rx1 |
54.688 |
99.482 |
0.544 |
| clpP | Streptococcus pneumoniae D39 |
54.688 |
99.482 |
0.544 |
| clpP | Streptococcus pneumoniae TIGR4 |
54.688 |
99.482 |
0.544 |
| clpP | Streptococcus pyogenes MGAS315 |
55.556 |
97.927 |
0.544 |
| clpP | Streptococcus pyogenes JRS4 |
55.556 |
97.927 |
0.544 |
| clpP | Streptococcus thermophilus LMD-9 |
54.167 |
99.482 |
0.539 |
| clpP | Streptococcus thermophilus LMG 18311 |
54.167 |
99.482 |
0.539 |
| clpP | Streptococcus mutans UA159 |
53.439 |
97.927 |
0.523 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
51.852 |
97.927 |
0.508 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.735 |
97.927 |
0.487 |