Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CWI26_RS08075 Genome accession   NZ_CP025043
Coordinates   1643645..1644256 (-) Length   203 a.a.
NCBI ID   WP_223375679.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1640415..1644930 1643645..1644256 within 0


Gene organization within MGE regions


Location: 1640415..1644930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS08060 (CWI26_08060) - 1640415..1641578 (+) 1164 WP_100881156.1 IS30 family transposase -
  CWI26_RS08065 (CWI26_08065) - 1641945..1643114 (-) 1170 WP_100881557.1 ABC transporter substrate-binding protein -
  CWI26_RS08070 (CWI26_08070) - 1643246..1643518 (-) 273 WP_100881558.1 DUF2129 domain-containing protein -
  CWI26_RS08075 (CWI26_08075) clpP 1643645..1644256 (-) 612 WP_223375679.1 ATP-dependent Clp protease proteolytic subunit Regulator
  CWI26_RS08080 (CWI26_08080) tnpA 1644457..1644930 (-) 474 WP_044685873.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22345.73 Da        Isoelectric Point: 6.7324

>NTDB_id=257614 CWI26_RS08075 WP_223375679.1 1643645..1644256(-) (clpP) [Streptococcus suis strain AH681]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=257614 CWI26_RS08075 WP_223375679.1 1643645..1644256(-) (clpP) [Streptococcus suis strain AH681]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC
ACGCCTTTTGAAAGACCGTATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC
TTTTCCTTGATGCCCAAGACCCTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTT
GCCATTGTAGACACGATGAATTTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT
CATTGCATCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAGCCGATGGGTGGAA
CTGGTGGCGGTACTCAGCAAACAGACATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC
TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAAC
CTTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

96.552

0.892
  clpP Streptococcus pyogenes MGAS315

92.347

96.552

0.892
  clpP Streptococcus mutans UA159

90.306

96.552

0.872
  clpP Streptococcus thermophilus LMD-9

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

88.776

96.552

0.857
  clpP Streptococcus pneumoniae R6

89.231

96.059

0.857
  clpP Streptococcus pneumoniae Rx1

89.231

96.059

0.857
  clpP Streptococcus pneumoniae D39

89.231

96.059

0.857
  clpP Streptococcus pneumoniae TIGR4

89.231

96.059

0.857
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

96.552

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

95.074

0.557

Multiple sequence alignment