Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CWD84_RS09660 Genome accession   NZ_CP025001
Coordinates   1769242..1770972 (+) Length   576 a.a.
NCBI ID   WP_060964790.1    Uniprot ID   A0AAI8MY76
Organism   Bacillus siamensis strain SCSIO 05746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764242..1775972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS09635 (CWD84_09635) - 1764644..1764898 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  CWD84_RS09640 (CWD84_09640) - 1764888..1765778 (+) 891 WP_060964787.1 polyprenyl synthetase family protein -
  CWD84_RS09645 (CWD84_09645) dxs 1765921..1767822 (+) 1902 WP_060964788.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CWD84_RS09650 (CWD84_09650) - 1767819..1768664 (+) 846 WP_060964789.1 TlyA family RNA methyltransferase -
  CWD84_RS09655 (CWD84_09655) ahrC 1768761..1769210 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  CWD84_RS09660 (CWD84_09660) recN 1769242..1770972 (+) 1731 WP_060964790.1 DNA repair protein RecN Machinery gene
  CWD84_RS09665 (CWD84_09665) spoIVB 1771136..1772416 (+) 1281 WP_060964791.1 SpoIVB peptidase -
  CWD84_RS09670 (CWD84_09670) spo0A 1772696..1773496 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  CWD84_RS09680 (CWD84_09680) alr 1773639..1774820 (-) 1182 WP_060964792.1 alanine racemase -
  CWD84_RS09685 (CWD84_09685) - 1775006..1775218 (-) 213 WP_060964793.1 spore germination protein -
  CWD84_RS09690 (CWD84_09690) - 1775343..1775555 (-) 213 WP_060965136.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63998.82 Da        Isoelectric Point: 4.7614

>NTDB_id=257089 CWD84_RS09660 WP_060964790.1 1769242..1770972(+) (recN) [Bacillus siamensis strain SCSIO 05746]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYQEGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLKNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKTRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=257089 CWD84_RS09660 WP_060964790.1 1769242..1770972(+) (recN) [Bacillus siamensis strain SCSIO 05746]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGAGACATTAATGCCGGGGGAAAAAGCGTCTGCCG
TGTCAACGGTAAATTAGTAACGATTGCGGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACA
ACCAGCTGTTAATGGAAGATGACAAGCATTTAGAGCTTTTGGATAAATTTGCAGGTGCTGAGGCCGAATCAGCGCTTCAG
GCATACCAAGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AAGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGAAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGCTGGATGATCTGGAGT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTC
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAAAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAACCAGAAAAGCCTGGGCCA
AAAAACTGGCGGAAGCAATTCATCAGGAATTAAAAAGCCTGTATATGGGCAAATCAACGTTTGATACGGAATTCCTCGTG
AAAACCGATCCGTCTGCCAGTGAGGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGAATTGACCTTGT
GAAATTTTTAATTTCAACGAACACCGGTGAGCCGTTAAAACCGCTGTCAAAGGTCGCATCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGCTGAAGAGTATTTTTTCTTCTCAGCAGGATGTCACCTCCATCATCTTTGATGAAGTGGACACTGGCGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTTTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887

Multiple sequence alignment