Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DMC40_RS03570 Genome accession   NZ_CP029694
Coordinates   633358..633540 (+) Length   60 a.a.
NCBI ID   WP_011054793.1    Uniprot ID   A0A0H2UWN8
Organism   Streptococcus pyogenes strain ABC020055975     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 628358..638540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC40_RS10085 - 628417..628539 (+) 123 WP_015055953.1 hypothetical protein -
  DMC40_RS03535 (DMC40_03535) - 628875..629207 (+) 333 WP_011054798.1 phage holin -
  DMC40_RS03540 (DMC40_03540) - 629209..629973 (+) 765 WP_011054797.1 CHAP domain-containing protein -
  DMC40_RS03545 (DMC40_03545) - 629985..630587 (+) 603 WP_011054796.1 hypothetical protein -
  DMC40_RS03550 (DMC40_03550) - 630598..631371 (+) 774 WP_011054795.1 hypothetical protein -
  DMC40_RS03555 (DMC40_03555) - 631381..631602 (+) 222 WP_009880241.1 hypothetical protein -
  DMC40_RS03560 (DMC40_03560) - 631602..632261 (+) 660 WP_009880240.1 hypothetical protein -
  DMC40_RS03565 (DMC40_03565) speA 632383..633138 (-) 756 WP_011054794.1 streptococcal pyrogenic exotoxin SpeA -
  DMC40_RS03570 (DMC40_03570) prx 633358..633540 (+) 183 WP_011054793.1 hypothetical protein Regulator
  DMC40_RS03575 (DMC40_03575) rlmD 633731..635086 (+) 1356 WP_002991789.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DMC40_RS03580 (DMC40_03580) rocA 635751..637105 (+) 1355 Protein_636 transcriptional regulator RocA -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 7014.08 Da        Isoelectric Point: 4.3313

>NTDB_id=257083 DMC40_RS03570 WP_011054793.1 633358..633540(+) (prx) [Streptococcus pyogenes strain ABC020055975]
MLYIDEFKEAIDKGYILGDTVAIVRKNGKIFDYVLPHEKVRDDEVVTVERVEEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=257083 DMC40_RS03570 WP_011054793.1 633358..633540(+) (prx) [Streptococcus pyogenes strain ABC020055975]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAGGGGTATATTTTAGGTGACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTACCACACGAAAAAGTGAGAGATGATGAAGTTGTGACGGTAGAGAGAGTGGAAGAAG
TGATGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 6CKA
  PDB 7N10
  PDB 7N1N
  PDB 8VSR

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

100

100

1

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

76.667

100

0.767

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS8232

75

100

0.75

  prx Streptococcus pyogenes MGAS315

68.333

100

0.683

  prx Streptococcus pyogenes MGAS315

76.19

70

0.533


Multiple sequence alignment