Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CSC33_RS22990 Genome accession   NZ_CP029660
Coordinates   4818285..4819778 (+) Length   497 a.a.
NCBI ID   WP_033970040.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4813285..4824778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS22965 (CSC33_4650) sutA 4814757..4815074 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  CSC33_RS22970 (CSC33_4651) - 4815152..4815577 (-) 426 WP_033970039.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CSC33_RS22975 (CSC33_4652) - 4815838..4817166 (-) 1329 WP_003109815.1 ammonium transporter -
  CSC33_RS22980 (CSC33_4653) glnK 4817206..4817544 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  CSC33_RS22985 (CSC33_4654) - 4817984..4818244 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  CSC33_RS22990 (CSC33_4655) comM 4818285..4819778 (+) 1494 WP_033970040.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CSC33_RS22995 (CSC33_4656) betT 4819903..4821887 (+) 1985 Protein_4463 choline BCCT transporter BetT -
  CSC33_RS23000 (CSC33_4657) betT 4822285..4824273 (+) 1989 WP_033978466.1 choline BCCT transporter BetT -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53049.89 Da        Isoelectric Point: 7.8008

>NTDB_id=255953 CSC33_RS22990 WP_033970040.1 4818285..4819778(+) (comM) [Pseudomonas aeruginosa strain AR_0446]
MSLAIVHSRAQVGVEAPSVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQAHGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPSLVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=255953 CSC33_RS22990 WP_033970040.1 4818285..4819778(+) (comM) [Pseudomonas aeruginosa strain AR_0446]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCAGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCAGCGCGGCGCATCACCCTCAACCTCGCCCCTGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCACTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCACGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCGGCGATCCATTCGGTAGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCATTCCGCCTCGGCGCCGTCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAATTCGAGCGCAAGGTCCTGGAAGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAAATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCCGCACGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGTTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTCGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCGCTCGCCGAAGCGGACCGTCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Haemophilus influenzae Rd KW20

55.467

100

0.561
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.048

99.799

0.559
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

54.781

100

0.553
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.465
  comM Helicobacter pylori 26695

39.243

100

0.396