Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CSC57_RS02775 Genome accession   NZ_CP029649
Coordinates   545911..546684 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain AR_0472     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 540911..551684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC57_RS02740 (CSC57_0505) - 541164..541934 (-) 771 WP_000473699.1 isoprenyl transferase -
  CSC57_RS02745 (CSC57_0506) frr 542307..542861 (-) 555 WP_001280006.1 ribosome recycling factor -
  CSC57_RS02750 (CSC57_0507) pyrH 542880..543602 (-) 723 WP_000057330.1 UMP kinase -
  CSC57_RS02755 (CSC57_0508) tsf 543739..544620 (-) 882 WP_000201387.1 translation elongation factor Ts -
  CSC57_RS02760 - 544655..544768 (-) 114 WP_001789890.1 hypothetical protein -
  CSC57_RS02765 (CSC57_0509) rpsB 544802..545569 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  CSC57_RS02770 - 545768..545860 (-) 93 WP_031788481.1 hypothetical protein -
  CSC57_RS02775 (CSC57_0510) codY 545911..546684 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CSC57_RS02780 (CSC57_0511) hslU 546709..548112 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CSC57_RS02785 (CSC57_0512) hslV 548178..548723 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CSC57_RS02790 (CSC57_0513) xerC 548720..549616 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  CSC57_RS02795 (CSC57_0514) trmFO 550033..551340 (-) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=255382 CSC57_RS02775 WP_000055337.1 545911..546684(-) (codY) [Staphylococcus aureus strain AR_0472]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=255382 CSC57_RS02775 WP_000055337.1 545911..546684(-) (codY) [Staphylococcus aureus strain AR_0472]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGATAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment